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Rosetta
2020.11
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Public Member Functions | |
def | __init__ |
def | apply |
Public Attributes | |
color | |
dashed | |
radius | |
Display hydrogen bonds according to `pyrosetta.rosetta.core.pose.Pose.get_hbonds()` in each initialized `.pdb` file, `Pose` or `PackedPose` object. Parameters ---------- first : optional `color` `str` indicating a standard color (e.g. "yellow"). Default: "black" second : optional `dashed` `True` or `False` to show hydrogen bonds as dashed lines. If `True`, then option `radius` must be `None`. If `False`, then option `radius` must be specified. Default: True third : optional `radius` `float` or `int` indicating the radius of the solid (non-dashed) stick connecting the atoms participating in each hydrogen bond. If set, this automatically sets the option `dashed` to `False`. Default: None Returns ------- A Viewer instance.
def pyrosetta.distributed.viewer.modules.setHydrogenBonds.__init__ | ( | self, | |
color = "black" , |
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dashed = True , |
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radius = None |
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) |
Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().
def pyrosetta.distributed.viewer.modules.setHydrogenBonds.apply | ( | self, | |
viewer, | |||
pose, | |||
pdbstring | |||
) |
References pyrosetta.distributed.viewer.modules._pdbstring_to_pose(), pyrosetta.distributed.viewer.modules.setBackgroundColor.color, pyrosetta.distributed.viewer.modules.setDisulfides.color, pyrosetta.distributed.viewer.modules.setHydrogenBonds.color, pyrosetta.distributed.viewer.modules.setHydrogenBonds.dashed, fmt.join(), ObjexxFCL.len(), pyrosetta.distributed.viewer.modules.setDisulfides.radius, pyrosetta.distributed.viewer.modules.setHydrogenBonds.radius, basic::sampling::orientations::QuatDBMetadata.radius, basic::options::OptionKeys::relax::range.range, binder.split(), and basic::options::OptionKeys::in::file.xyz.
Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask.execute().
pyrosetta.distributed.viewer.modules.setHydrogenBonds.color |
pyrosetta.distributed.viewer.modules.setHydrogenBonds.dashed |
pyrosetta.distributed.viewer.modules.setHydrogenBonds.radius |