You are here

problems with cluster program

2 posts / 0 new
Last post
problems with cluster program


When I try to use cluster program to cluster protein strucutres generated by rosetta ab-initio I get the following error:

ERROR: !pdb.empty()
ERROR:: Exit from: src/core/io/pdb/ line: 208

I used following options:

cluster.linuxgccrelease -database /opt/rosetta/rosetta_database/
-in:file:l pdb-list

Thu, 2010-04-08 07:45

It looks like the PDB reader thinks your PDBs are empty. Not to be trivial, but are they? What's in your list pdb-list? (are they in the right directory?)

Fri, 2010-04-16 08:34