The problem hasn't been solved
I have came across some error when compiling the software. this is the log.
@localhost rosetta_source]$ scons bin
scons: Reading SConscript files ...
scons: done reading SConscript files.
scons: Building targets ...
Hi,
I read the manual of rosetta3.3, and found that there are at least 2 weights for fixbb design:
1. By default, the fixbb application uses the "score12" score function by default (the combination of "standard.wts" and "score12.wts_patch")
2. with the 'hpatch' solubility score term
Does anyone has the experience of running fixbb using these two weights? Which one is better? Thank you
I am trying to install Rosetta++2.1.0
and I changed the options.settings file to be compatible with gccc 4.5 which is in my my CYGWIN
but I am getting the following big error.
I will be very grateful if somebody could suggest a solution:
ERROR :
cygwin warning:
MS-DOS style path detected: C:\Documents and Settings\All Users\Application Da ta\scons/site_scons
Dear all,
Does comparative modeling works for membrane proteins?
I found a application called "topology broker" in the documentation on "TopologyBroker_GPCR" included in "protocol_capture-3.3" bundle. According to the abstract, this protocol has been used for modeling of metabotropic glutamate receptor subtype 5 protein using GPRC crystal structures. But the "flags" is only for rebuilding loops of a membrane protein whose crystal structure is known.
Does anyone know exactly how to use this?
Thanks!
-Justin Zhang
when i run the sample folding script you can find on www.pyrosetta.org/scripts i get this error:
I've been trying to assemble a poly-peptoid sequence using the make_pose_from_sequence function, however there seems to be an error in the way the polymer gets connected in the pose. For instance, the command:
make_pose_from_sequence(pose, "AAX[P02]AA", "fa_standard")
when i run the sample folding script you can find on www.pyrosetta.org/scripts i get this error: init() got unexpected keyword argument 'keep_history' does anybody have any ideas about how to solve it?
Hello,
I am planning to analyze residue interactions using residue_energy_breakdown utility as written in the documentation. However I could not find "residue_energy_breakdown" command in rosetta_source/bin.
I've built Rosetta3.3 in RedHat 5.4 by "scons bin mode=release" and build seemed to be finished without any problem.
Should I do any other things to use residue_energy_breakdown?
Thank you,
hi.................
i am new to rosetta. I have installed rosetta 3.3 in ubuntu linux 10.10. I wanted to do protein-protein docking & protein-peptide docking. so, can u help me to do this things. i have read the manuals of rosetta3.3 but i m unable to understand it correctly.Can you show me some direction to do this things & also how to create input files .pdb with only atom details for docking n other things also.............
thank you.....................
Hi!
I just downloaded the Rosetta MultiGraft and unzipped the documentation file help.tgz. However, all the text files in it are empty!
Can you please help,
Aroop
