After obtaining multiple (e.g.100) models from relax.linuxgccrelease, I think I need to select the most likely one for further design work. By looking at
2) Is this Model Good.pdf
3) Preparing Your Structure.pdf
in Meiler Lab's tutorials, I think I need to do "cluster model" and "score vs RMSD plots" to determine the best model.
I can find cluster protocol in
Can I ask where is the protocol of "score vs RMSD plots"? Thank you very much.