I am trying to use "clustering.py" but I was told "OSError: [Errno 2] No such file or directory". Can I ask how to solve this?
I am sorry but it seems I have been asking technical questions all the time. Please tell me if there is something I can read to prepare my knowledge to debug. For example, how can I actually debug this python problem based on the error message?
Thank you very much.
The following is the command line and prompt.
/mnt/hgfs/Cheng/Rosetta$ python ~/Cheng/rosetta_2014.30.57114_bundle/tools/protein_tools/scripts/clustering.py --pdb_list=/mnt/hgfs/Cheng/Rosetta/list_of_pdbs.txt --rosetta=~/Cheng/rosetta_2014.30.57114_bundle/main/source/bin/cluster.linuxgccrelease --database=~/Cheng/rosetta_2014.30.57114_bundle/main/database --options=/mnt/hgfs/Cheng/Rosetta/cluster.options cluster_summary.txt cluster_histogram.txt
Parsing pdb file scores
Traceback (most recent call last):
File "/home/dancebean/Cheng/rosetta_2014.30.57114_bundle/tools/protein_tools/scripts/clustering.py", line 59, in <module>
cluster_output = subprocess.Popen(command,stdout=subprocess.PIPE).communicate()
File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child
OSError: [Errno 2] No such file or directory