I am trying to use fixbb to replace some amino acid residues from a template PDB into my own sequence.
Can I ask
1) Is "-dun10" the latest rotamer database? (How can I know if it is the latest?)
2) Do I need to add additional flags (e.g. -ex1, -ex2, -ex3, -ex4) or they have been set by default?
Basically, I do not have particular requirement for the structure. So I am wondering if all the flags have been set by default?
The command line is:
~/Cheng/rosetta_2014.30.57114_bundle/main/source/bin/fixbb.linuxgccrelease @/home/lanselibai/Cheng/fixbb/flags_fullatom_dun10 -database ~/Cheng/rosetta_2014.30.57114_bundle/main/database -resfile /home/lanselibai/Cheng/fixbb/LC_resfile.txt >& /home/lanselibai/Cheng/fixbb/log.txt &
The options file is:
# I jus want one output structure as I will do relax later.
Thank you very much.