I am using Rosetta to build my protein from Ca-trace to all-atom, and then to refine this structure against cryo-em density.
However, when I use these two flags:- RBSegmentRelax::cst_wt 1.0 and -RBSegmentRelax::cst_width 4.0, I am getting the error:
Option matching -RBSegmentRelax:cst_wt not found in command line top-level context.
When I remove these two flags, everytging works perfectly.
So, my question is: do these two flags are still used by ca_to_allatom application?
If not, what would be the equivalent keywords? I have searched net and I haven't found any info about it.
The exact version of the Rosetta I am using is: rosetta_bin_linux_2016.02.58402_bundle
thanks a lot