I downloaded last Friday's - 9/9/11 - Rosetta3.3 version (curious to try the "fastsaxs" scoring) but there seems to be a problem in Rosetta3.3 when handling constraints.
Running a script like the one posted elsewhere causes an exception under minirosetta 3.3, while 3.2 is able to run the very same script without problems. Here is what the message reads:
protocols.moves.MonteCarlo: QuickCCD trials= 450; accepts= 0.1111; energy_drop/trial= -7.19030
protocol.loops.LoopMover: Chainbreak: 0.00119666 Max: 0.2
protocols::checkpoint: Deleting checkpoints of Remodel
protocols::checkpoint: Deleting checkpoints of Loopbuild
[ERROR] Exception caught by JobDistributor for job S_TEMPLATE_0001Atom OVL1 132 not found
protocols.jd2.JobDistributor: S_TEMPLATE_0001 reported failure and will NOT retry
protocols.jd2.JobDistributor: no more batches to process...
protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 406 seconds
Interestingly, running a standard abinitio protocol with the same constraints under minirosetta 3.3 causes no error. So somehow either the comparative or the loop modeling protocol are probably faulty.