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Rosetta 3 - Applications
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,576 |
by smlewis Tue, 2017-08-15 23:19 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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3,101 |
by staciekim Thu, 2017-08-17 17:06 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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2,238 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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3,045 |
by rmoretti Tue, 2017-08-22 09:03 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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5,848 |
by rmoretti Thu, 2017-08-24 08:19 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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3,344 |
by rmoretti Thu, 2017-08-24 11:00 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,666 |
by swarekwood Fri, 2017-08-25 05:08 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,854 |
by brspurri Sat, 2017-08-26 07:08 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,980 |
by rmoretti Mon, 2017-09-04 10:33 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
15 |
10,395 |
by smlewis Fri, 2017-09-08 09:16 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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2,055 |
by rmoretti Fri, 2017-09-15 13:11 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
2,353 |
by dyu Thu, 2017-09-28 18:54 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
0 |
1,154 |
by sn Thu, 2017-10-05 17:07 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,857 |
by rmoretti Tue, 2017-10-10 09:54 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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3,852 |
by rmoretti Tue, 2017-10-10 09:58 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,711 |
by rmoretti Tue, 2017-10-10 10:08 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,643 |
by rmoretti Tue, 2017-10-17 09:03 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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4,423 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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2,259 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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4,388 |
by cdegut Fri, 2017-11-03 05:50 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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5,454 |
by jessye Fri, 2017-11-03 20:15 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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2,041 |
by smlewis Mon, 2017-11-13 10:43 |
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ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
32 |
25,613 |
by malkeet.singh Tue, 2017-11-14 04:33 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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3,487 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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7,121 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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4,617 |
by rmoretti Fri, 2017-12-01 12:05 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,958 |
by smlewis Mon, 2017-12-04 12:18 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
1,469 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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5,009 |
by fradom Tue, 2017-12-05 01:52 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,626 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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1,176 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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1,239 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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1,242 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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4,159 |
by smlewis Wed, 2017-12-13 09:54 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,759 |
by kamau Wed, 2017-12-13 14:31 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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1,102 |
by sdh_h Sun, 2017-12-17 06:07 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
4,993 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
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4,113 |
by smlewis Sat, 2017-12-23 15:56 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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2,325 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,646 |
by rmoretti Mon, 2018-01-15 16:14 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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2,230 |
by rmoretti Tue, 2018-01-16 07:24 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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3,071 |
by hzhekova Tue, 2018-01-16 10:31 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
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2,184 |
by rmoretti Tue, 2018-01-30 07:51 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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3,016 |
by rmoretti Tue, 2018-02-06 09:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
6 |
6,084 |
by Loki01 Thu, 2018-02-15 13:54 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,753 |
by rmoretti Wed, 2018-02-21 15:21 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
3,325 |
by rmoretti Wed, 2018-03-07 08:44 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
2,657 |
by cossio Sun, 2018-03-11 09:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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3,342 |
by shadrinams Wed, 2018-03-14 07:46 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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6,434 |
by rmoretti Mon, 2018-03-19 12:12 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
5 |
4,789 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
1,136 |
by enmirts Wed, 2018-03-28 10:34 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
1,253 |
by evo_umich Mon, 2018-04-02 12:13 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
0 |
1,201 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
0 |
1,238 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
1,651 |
by rmoretti Tue, 2018-04-10 15:29 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
1 |
1,829 |
by rmoretti Tue, 2018-04-10 15:34 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
3,450 |
by Loki01 Thu, 2018-04-12 08:28 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
0 |
1,195 |
by asbelx Fri, 2018-04-20 03:33 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,380 |
by subha Fri, 2018-04-20 12:49 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,769 |
by smlewis Mon, 2018-05-07 11:42 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,352 |
by cossio Fri, 2018-05-18 09:51 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
1,651 |
by rmoretti Fri, 2018-05-18 12:28 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
59,905 |
by rmoretti Fri, 2018-05-18 12:40 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
3,411 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
5,591 |
by smlewis Thu, 2018-06-14 10:26 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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3,320 |
by asbelx Mon, 2018-06-18 22:34 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
4,201 |
by tong Sun, 2018-06-24 23:30 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,815 |
by rmoretti Thu, 2018-06-28 12:44 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
3,272 |
by rmoretti Thu, 2018-06-28 12:58 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
3,306 |
by ashu4487 Mon, 2018-07-16 19:24 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
1,534 |
by smlewis Fri, 2018-07-27 13:32 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
2,266 |
by jlapin Wed, 2018-08-01 07:15 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,651 |
by rmoretti Fri, 2018-08-03 07:54 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
1,588 |
by rmoretti Fri, 2018-08-03 08:16 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
1 |
1,909 |
by rmoretti Fri, 2018-08-03 08:26 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
4,872 |
by smlewis Wed, 2018-08-08 15:48 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,668 |
by rmoretti Fri, 2018-08-24 11:28 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
0 |
1,172 |
by mbakalar Fri, 2018-08-31 13:06 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
0 |
1,005 |
by MA Wed, 2018-09-05 00:50 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,987 |
by smlewis Mon, 2018-09-10 11:48 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,749 |
by smlewis Fri, 2018-09-14 10:34 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
2,489 |
by rmoretti Thu, 2018-09-20 09:19 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,704 |
by rmoretti Thu, 2018-09-20 09:23 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
4,000 |
by Anpu Tue, 2018-09-25 18:53 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
8,918 |
by Anpu Tue, 2018-09-25 19:06 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
3,697 |
by cossio Fri, 2018-10-12 04:43 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,964 |
by smlewis Mon, 2018-10-15 08:42 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
4,774 |
by dfcoelho Tue, 2018-10-16 09:05 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,472 |
by G Mustafa Wed, 2018-10-17 05:41 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,912 |
by G Mustafa Thu, 2018-10-18 05:31 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,456 |
by matteoferla Tue, 2018-10-30 02:54 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
3,515 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
1,566 |
by jadolfbr Fri, 2018-11-09 14:28 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
4,973 |
by rmoretti Mon, 2018-11-12 14:31 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
3,076 |
by rmoretti Mon, 2018-11-12 14:35 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
0 |
1,078 |
by ylwang Sun, 2018-11-18 17:51 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
1,576 |
by rmoretti Wed, 2018-11-21 15:10 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
1,912 |
by rmoretti Wed, 2018-11-21 15:31 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,972 |
by rmoretti Wed, 2018-11-21 15:40 |
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