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Rosetta 3 - General

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Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
4,696 by rmoretti
Thu, 2017-08-03 09:01
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
7,697 by rohi
Sun, 2020-07-26 17:03
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
5,880 by Anonymous
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
4,333 by einew
Mon, 2014-04-21 06:47
Normal topic Truncating a protein using rosetta
by Wexter300 » Mon, 2023-02-13 12:05
2
610 by Wexter300
Mon, 2023-02-13 13:04
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
3,608 by alejandro
Mon, 2014-04-21 06:47
Normal topic total_score changes when decomposing bb hbonds ref2015
by Liviu Copoiu » Mon, 2022-10-31 15:40
2
770 by Liviu Copoiu
Mon, 2022-10-31 16:03
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
2,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
2,078 by rmoretti
Thu, 2018-06-28 14:28
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
6,288 by Lindsay
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
1,531 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
7,230 by vmulligan
Thu, 2020-07-16 23:31
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
1,566 by rmoretti
Wed, 2021-02-03 14:45
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
4,450 by ac.research
Mon, 2017-09-04 16:43
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
4,280 by rmoretti
Mon, 2018-01-15 15:34
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,680 by rmoretti
Tue, 2019-07-09 15:57
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
1,095 by asbelx
Wed, 2021-09-08 23:19
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
2,513 by smlewis
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
2,043 by rmoretti
Fri, 2015-07-03 13:14
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
3,500 by smlewis
Mon, 2014-04-21 06:47
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
1,043 by asbelx
Mon, 2022-06-06 23:15
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,758 by jrcf
Fri, 2015-10-16 10:57
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
8,086 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
3,120 by asbelx
Thu, 2018-04-26 00:23
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
2,256 by rmoretti
Sat, 2018-03-17 10:43
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,766 by doranhen
Mon, 2014-04-21 06:47
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,777 by rmoretti
Tue, 2016-07-12 08:48
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
0
444 by mrosam
Mon, 2022-08-08 01:37
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
0
300 by chenna
Sun, 2023-04-23 23:52
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
16,557 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
6,290 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
8,711 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,937 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
4,316 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,520 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
3,140 by doranhen
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,901 by IAndre
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
2,210 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
2,003 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
4,383 by IAndre
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
5,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
5,466 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,511 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
3,792 by zharmad
Mon, 2014-04-21 06:47
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
9,706 by rmoretti
Mon, 2016-05-09 09:23
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
18,601 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,333 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
2,187 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
6,601 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
925 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,957 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
572 by JW_24
Tue, 2023-01-24 04:55
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
3,152 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
1,011 by rmoretti
Tue, 2021-11-30 07:41
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,763 by pedro.guillem
Wed, 2020-06-24 04:49
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
16,093 by tevang
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,389 by smlewis
Mon, 2014-04-21 06:47
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,297 by rmoretti
Tue, 2016-07-12 08:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,921 by smlewis
Mon, 2014-04-21 06:47
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,449 by vmulligan
Wed, 2021-04-28 14:20
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50
30
27,339 by smlewis
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
3,028 by kalabharath
Mon, 2014-04-21 06:47
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
3,948 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,857 by smlewis
Wed, 2017-06-28 06:59
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
3,726 by smlewis
Mon, 2014-04-21 06:47
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
4,549 by smlewis
Mon, 2014-04-21 06:47
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
1,223 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
629 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,705 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,492 by smlewis
Mon, 2014-04-21 06:47
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,603 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
5,232 by Ashafix
Wed, 2014-02-19 06:53
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
1,838 by rmoretti
Wed, 2021-03-17 13:52
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,036 by smlewis
Mon, 2014-04-21 06:47
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,323 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,722 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
3,428 by smlewis
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
4,562 by Lindsay
Mon, 2014-04-21 06:48
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
8,628 by qlj
Mon, 2014-04-21 06:47
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
4,408 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
975 by Kazu
Wed, 2020-05-20 11:58
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
1,149 by matteoferla
Thu, 2021-04-01 04:06
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
3,386 by smlewis
Mon, 2014-04-21 06:47
Normal topic Should all input structures to energy_based_clustering have an output pdb file?
by Brian Wiley » Mon, 2023-01-30 20:42
2
660 by Brian Wiley
Tue, 2023-01-31 19:08
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,586 by smlewis
Wed, 2016-07-13 23:41
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,493 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
720 by ajasja
Mon, 2022-05-23 07:19
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,088 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,359 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,369 by rmoretti
Mon, 2015-05-25 11:00
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
3,262 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
649 by rmoretti
Wed, 2022-09-07 09:19
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,202 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,834 by rmoretti
Mon, 2014-04-21 06:47
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
3,959 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
0
379 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
3,803 by smlewis
Wed, 2018-04-11 11:45
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
743 by dkesar
Fri, 2021-06-04 19:09
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,978 by smlewis
Mon, 2018-04-16 16:32
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