I am keen on creating a custom Antibody design protocol for a problem.
One solution I can come up with is using a separate mover, such as FastDesign or PackRotamers, to which I can easily specify all my TaskOperations.
This counter-intuitively defeats the purpose of using the AntibodyDesignMover as I will have to use separate movers for grafting, docking (yes, I'm keen on docking with siteconstraints) and then design; all interspersed by several Metropolis evaluations after each mover. All of this will require a longer endeavour from my end.
I am interested to know if there is a more innovative solution to this problem.
Feel free to ask for more details or information.