When going through the rosetta tutorials, I see that the vall database is old, and I want to build new vall database.
could you please let me know how to efficiently build new vall database from PDB structures. When I run pdb2vall, it gives me this:
Usage: pdb2vall.py [options]
-h, --help show this help message and exit
-p PDB_FN five-letter code + chain pdb id eg. 2oxgZ
don't get structure_profile check point, use sequence
-d debug: print out some information
-n dry run: don't run the system( cmd )
I am finding it difficult to understand what options to choose for efficient vall database creation. Thanks!