I am currently trying to run Rifdock, which I compiled according to the instructions in this repo (https://github.com/rifdock/rifdock). However, everytime I pass it a *.pdb input file, I get the following error:
=================================================== preparing target ===================================================
ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType!
ERROR:: Exit from: /shortened_path/rosetta/vendor/2018.09.60072/main/source/src/core/chemical/ResidueType.cc line: 1744
The program runs for about 30 seconds, before it errors out. The error is really early in the sequence of steps. It occurs while rifgen is trying to prepare the target. I am attaching the .log file for reference.
Please let me know if you've compiled Rifdock on RHEL before, and if you know anything about this error.