Hello,
I am trying to run the recess-turner function with the following command:
recces_turner.macosclangrelease -score:weights stepwise/rna/turner -seq1 gu -seq2 [2MA]c -recces:n_cycle 9000000 -recces:temps 0.8 1 1.4 1.8 3 7 30 -st_weights 9.024828183205116 18.24157438187578 22.310063998885838 25.608533286161883 25.949659063278826 25.027484033009934 -recces:out_prefix ST -save_score_terms
I keep getting a segmentation fault when I use the 2MA modified residue. However, it is not all modified residues that fail. The following command works:
recces_turner.macosclangrelease -score:weights stepwise/rna/turner -seq1 gu -seq2 [3MC]c -recces:n_cycle 9000000 -recces:temps 0.8 1 1.4 1.8 3 7 30 -st_weights 9.024828183205116 18.24157438187578 22.310063998885838 25.608533286161883 25.949659063278826 25.027484033009934 -recces:out_prefix ST -save_score_terms
Please help why some modified residues work, and others don't.
Just an updated error on this. I downloaded the debug version of Rosetta:
ERROR: Assertion `vectorL_ZeroSelector< L != 0 >::ge( i, l_ )` failed.
ERROR:: Exit from: src/utility/vectorL.hh line: 416
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS.
Assertion failed: (( vectorL_ZeroSelector< L != 0 >::ge( i, l_ ) ) || handle_assert_failure( "vectorL_ZeroSelector< L != 0 >::ge( i, l_ )", __FILE__, __LINE__ )), function operator[], file vectorL.hh, line 416.
Abort trap: 6