hi i am running rosettaCM with a protein which has a ligand and a heavy atome molecule, MN.
I input a params file for the ligand which rosetta sees ok, but it gives an error saying that MN is unrecognized residue.
I confirmed that MN.params file is in the right directory and the the txt file which specifies residues has the MN in it.
I also tried to input the MN.params file directly using -extra_res_fa flag but the error remains.
is metal ions not allowed when running rosettaCM? thanks.