Unsolved

Hi ALL,

I am trying to install the parallel version of Rosetta3.2 with the command, scons bin mode=release extras=mpi
However I am getting the following error:

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
scons: Building targets ...

I have been trying to use the scoring function to calculate the rosetta-holes score for a pdb file (Initially I am using the pdb provided in the scoring demo). I keep getting an error related to reading the input file. I think this is the input that is passed to DAlphaBall, but it might be some other problem I am unaware of. I am using the following command:

score_jd2.linuxgccrelease -s test_in.pdb -score:weights holesscore -database ../../../rosetta_database/ -holes:dalphaball "pathToDAlphaBallExe"

and I get the following error (repeated for 10 tries):

Hi,
I am trying install rosetta on the fedora system,with gcc 4.1.2 and scons 2.0.1. But I encountered a problem while I install with the command:scons bin mode=release.
there are two warnings that always repeat again and again, I do not know how to solve this problem.
scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
File "/xtal_programs/rosetta3.2.1/rosetta_source/SConscript", line 40, in

scons: warning: No hashlib or MD5 module available, CacheDir() not supported

All,

I am getting large energy increases when repacking a protein using v2.0 of PyRosetta.ScientificLinux64bit (I'm running RHEL5.5_64, Python 2.66)

1st issue On init(), I recieve:


basic.io.database: Database file opened: .../minirosetta_database/Rama_smooth_dyn.dat_ss_6.4
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 7533 residue types
core.pack.task: Packer task: initialize from command line()
Warning: Unable to locate database file Dunbrack02.lib.bin