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FAQ by admin » Mon, 2010-08-30 01:38 |
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22,366 |
by Sergey Fri, 2015-09-04 16:14 |
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Different results FastRelax pyrosetta vs rosetta_scripts by karenjgonzalez » Tue, 2023-06-20 09:52 |
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208 |
by karenjgonzalez Fri, 2023-08-11 10:57 |
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Minimizing a Symmetric Structure by ammar.x.gilani » Wed, 2023-08-02 11:10 |
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76 |
by ammar.x.gilani Wed, 2023-08-02 11:10 |
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Post-traslational modifications by diegoms » Wed, 2023-06-21 01:22 |
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271 |
by diegoms Wed, 2023-08-02 01:18 |
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How can I automate mutations with PyRosetta or other Rosetta software? by archaeopteryx » Mon, 2023-07-03 19:35 |
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386 |
by rmoretti Thu, 2023-07-06 08:20 |
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Set torsions for atoms in different residues by mluengo » Fri, 2023-05-12 03:07 |
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186 |
by mluengo Fri, 2023-05-12 03:07 |
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Challenge with applying AntibodyCDRGrafter method and MinMover method by kylevaccaro » Sat, 2023-02-18 21:41 |
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1,049 |
by nannemdp Sun, 2023-02-19 12:05 |
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How does one convert a PDB file of an antibody to AHO scheme? by kylevaccaro » Mon, 2023-02-13 18:14 |
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1,149 |
by kylevaccaro Wed, 2023-02-15 19:18 |
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Applying RMSD constraints using pyrosetta or Rosettascripts by chenna » Thu, 2023-02-09 05:37 |
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1,276 |
by chenna Fri, 2023-02-10 05:37 |
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Problem importing AlphaFold PDB by Rick Neubig » Mon, 2023-01-09 09:48 |
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1,761 |
by Rick Neubig Tue, 2023-01-10 04:11 |
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"corrupted" small molecules. aromatic rings get distortet during relax by patcD » Thu, 2022-07-21 04:51 |
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2,961 |
by rmoretti Thu, 2022-07-21 07:14 |
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403 on documentation for PyRosetta by matteoferla » Mon, 2022-06-06 12:19 |
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2,255 |
by rmoretti Mon, 2022-06-06 12:35 |
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Is this the intended behaviour? by Ken » Thu, 2022-05-05 14:59 |
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2,346 |
by Ken Fri, 2022-05-06 07:03 |
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Protein docking with PyRosetta Error! by Apiwat » Sat, 2014-01-11 23:32 |
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6,541 |
by shivarawat115 Mon, 2022-04-11 16:03 |
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How does min_mover work? by anidude » Fri, 2022-03-04 07:30 |
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1,886 |
by matteoferla Sun, 2022-03-20 02:53 |
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Atom mapping in RMSD functions by gkell » Tue, 2022-02-15 15:48 |
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863 |
by rmoretti Fri, 2022-02-18 10:23 |
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Acessing energies terms from energy.show() table by João Sartori » Mon, 2022-02-07 07:56 |
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1,005 |
by João Sartori Wed, 2022-02-09 04:35 |
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Pose is full atom and mover expects centroid, how do I handle it the best? by hlinn » Thu, 2022-01-27 05:55 |
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1,529 |
by hlinn Tue, 2022-02-08 07:23 |
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ΔΔG Calculation of a Mutation with PyRosetta by akaashvenkat » Fri, 2018-03-09 01:44 |
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11,715 |
by matteoferla Wed, 2022-01-12 01:20 |
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any examples of calling SnugDock from pyrosetta? by antonkulaga » Thu, 2021-12-23 16:13 |
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885 |
by matteoferla Mon, 2022-01-10 07:14 |
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Questions of Cartesian_ddG calculation in PyRosetta by CKS2001 » Fri, 2022-01-07 01:36 |
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1,380 |
by CKS2001 Sat, 2022-01-08 02:14 |
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Collect data about the modelling by Roberto » Thu, 2022-01-06 01:43 |
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529 |
by Roberto Thu, 2022-01-06 01:43 |
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Calling SnugDock from PyRosetta by shruthi.murali » Wed, 2020-07-29 15:10 |
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2,605 |
by antonkulaga Thu, 2021-12-23 16:07 |
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Symmetry breaks due to small structure gaps by dbiedermann » Mon, 2021-09-20 17:39 |
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651 |
by dbiedermann Mon, 2021-09-20 17:40 |
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Explicit water This topic has been moved to "Rosetta 3 - General " (View topic) |
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restricted fast relax changes whole structure? by patcD » Wed, 2021-08-25 02:05 |
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1,581 |
by patcD Wed, 2021-09-01 03:30 |
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Molfile to params creating invalid params output by edan » Sun, 2021-08-29 01:54 |
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939 |
by tsztain Sun, 2021-08-29 11:15 |
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Less silly way to get number of iterations of Relax by matteoferla » Tue, 2021-07-20 07:00 |
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1,292 |
by matteoferla Tue, 2021-07-20 13:44 |
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How to create an ObjexxFCL FArray? by matteoferla » Tue, 2020-08-18 03:22 |
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1,739 |
by matteoferla Thu, 2021-07-08 06:02 |
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Hydrogen Bonding Distances and Atom identification by kmolloy717 » Fri, 2021-06-25 08:15 |
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1,124 |
by matteoferla Wed, 2021-06-30 09:02 |
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FastRelax results in bad structure by Eden » Mon, 2021-04-26 08:39 |
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1,446 |
by Eden Wed, 2021-06-23 01:13 |
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pyrosetta die slow by Eden » Sun, 2021-06-13 00:05 |
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1,255 |
by Eden Mon, 2021-06-14 23:10 |
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Atom-wise energy terms from nearest N-neighbors by jasiozaucha » Thu, 2021-03-25 14:49 |
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1,778 |
by matteoferla Fri, 2021-05-28 02:41 |
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RosettaModel blueprint for PyRosetta by bbrown11 » Tue, 2015-03-03 13:53 |
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4,161 |
by matteoferla Thu, 2021-04-29 06:30 |
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Pyrosetta score protein structures with missing atoms in sidechain by xuezhi » Fri, 2021-04-09 13:33 |
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1,000 |
by matteoferla Sat, 2021-04-10 07:18 |
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Best way to store a pose by Pyrosetta for Pyrosetta by matteoferla » Wed, 2021-04-07 06:50 |
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1,637 |
by matteoferla Wed, 2021-04-07 06:50 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
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1,325 |
by matteoferla Tue, 2021-03-30 08:20 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
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1,456 |
by vmulligan Mon, 2021-03-29 10:39 |
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Calculate TM-score by nasim.soltani58 » Fri, 2021-03-26 16:50 |
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1,961 |
by rmoretti Mon, 2021-03-29 06:53 |
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How to relax glycans after glycosylating sites on a pose? by sdtruong » Mon, 2021-03-22 09:44 |
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1,299 |
by sdtruong Mon, 2021-03-22 17:05 |
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cartesian delta delta G by patcD » Wed, 2021-02-10 01:46 |
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3,090 |
by j0kaso Wed, 2021-03-03 17:37 |
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Alternatives to DockMCMProtocol by swirt » Thu, 2021-01-28 17:37 |
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2,211 |
by swirt Thu, 2021-02-25 21:54 |
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Individual Residue Energy by Peik » Fri, 2021-02-19 10:13 |
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1,846 |
by Peik Fri, 2021-02-19 10:30 |
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Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
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1,504 |
by matteoferla Tue, 2021-01-05 04:05 |
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How do I insert or delete residues into specific locations? by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 |
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1,360 |
by matteoferla Tue, 2021-01-05 03:53 |
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Different types of MinMover by nasim.soltani58 » Sun, 2020-12-20 11:44 |
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1,514 |
by nasim.soltani58 Tue, 2020-12-22 13:37 |
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Using pyrosetta to generate quaternary structure of protein by nasim.soltani58 » Thu, 2020-11-19 17:35 |
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2,733 |
by nasim.soltani58 Tue, 2020-12-08 22:45 |
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Assesing the docking by nasim.soltani58 » Sat, 2020-12-05 21:19 |
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1,510 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
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How do you combine two .pdb protein structure files of the same protein? by nasim.soltani58 » Sun, 2020-11-22 23:14 |
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4,468 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
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Extending Pyrosetta toturials for docking by adding constraints by nasim.soltani58 » Thu, 2020-11-26 13:16 |
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1,131 |
by matteoferla Wed, 2020-12-02 13:49 |
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how do i unding properly? by patcD » Fri, 2020-11-20 00:38 |
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1,879 |
by matteoferla Fri, 2020-11-20 07:47 |
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Structure not changing after pose.set_phi by publicclass » Thu, 2020-11-05 09:34 |
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867 |
by publicclass Thu, 2020-11-05 09:34 |
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WindowsError: [Error 32] by jetu20 » Sun, 2020-10-11 21:02 |
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889 |
by jetu20 Sun, 2020-10-11 21:02 |
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Custom Constraints by jinli711 » Wed, 2020-07-15 15:22 |
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1,943 |
by matteoferla Fri, 2020-10-09 05:20 |
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Gradient Descent by nasim.soltani58 » Thu, 2020-10-01 16:02 |
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2,088 |
by vmulligan Tue, 2020-10-06 15:13 |
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"Server Could Not Be Reached" although I have an Internet connection by epi89 » Mon, 2020-09-28 21:32 |
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1,381 |
by smlewis Tue, 2020-09-29 12:00 |
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trRosetta modelling with a ligand by ShiranBZ » Tue, 2020-08-25 01:44 |
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1,224 |
by ShiranBZ Tue, 2020-08-25 01:44 |
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Suggestion: setting Sphinx documentation to not skip __init__ by matteoferla » Mon, 2020-08-24 09:02 |
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1,384 |
by matteoferla Mon, 2020-08-24 09:02 |
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Compile C++ Rosetta to Pyrosetta by michelleqyh » Fri, 2020-08-21 08:44 |
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887 |
by michelleqyh Fri, 2020-08-21 08:44 |
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Generating Atom Pair Constraints by Peik » Wed, 2020-08-05 15:39 |
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2,210 |
by Peik Thu, 2020-08-06 11:50 |
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How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:26 |
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772 |
by michelleqyh Tue, 2020-08-04 07:26 |
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Best Way to Append/Insert Residue by jaulicino » Tue, 2020-07-21 10:24 |
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3,107 |
by matteoferla Sat, 2020-07-25 03:52 |
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Segfault when loading scorefxn() and load_from_pdb() by mm » Wed, 2020-07-22 03:00 |
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844 |
by mm Wed, 2020-07-22 03:02 |
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Adding a residue type to a residue type set by matteoferla » Wed, 2020-07-08 08:14 |
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2,314 |
by matteoferla Fri, 2020-07-10 02:20 |
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ERROR: unrecognized element Rp when using pose_from_pdb by johnnytam100 » Thu, 2020-07-09 02:53 |
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2,444 |
by rmoretti Thu, 2020-07-09 08:35 |
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Interface Analyzer with Glycans by drewaight » Tue, 2020-06-09 20:06 |
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1,295 |
by matteoferla Wed, 2020-07-01 05:30 |
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Python3.8 release for Mac download is a dead link by noahC_noahDo » Fri, 2020-06-26 18:20 |
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895 |
by noahC_noahDo Fri, 2020-06-26 18:20 |
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How to fold-and-dock in PyRosetta? by sarah_b » Thu, 2020-05-14 02:37 |
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1,092 |
by sarah_b Thu, 2020-05-14 02:37 |
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Affinity optimization with GreedyOptMutationMover by wentlewi » Thu, 2020-05-07 08:29 |
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983 |
by wentlewi Thu, 2020-05-07 12:33 |
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pose_from_rcsb error by criss.hartzell » Wed, 2020-04-22 15:12 |
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1,734 |
by matteoferla Thu, 2020-04-30 12:04 |
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Pyrosetta imported after rdkit by matteoferla » Sun, 2020-03-01 02:38 |
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1,061 |
by matteoferla Sun, 2020-03-01 02:38 |
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Rosetta get_fa_scorefxn() by israeldesta » Thu, 2019-10-31 10:18 |
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4,080 |
by jadolfbr Thu, 2019-11-14 15:33 |
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Modeling small molecules by iGemBoulder » Wed, 2019-09-18 11:53 |
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2,060 |
by rmoretti Wed, 2019-09-18 14:24 |
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Resfile Error by ac.research » Wed, 2019-07-17 13:25 |
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4,130 |
by vmulligan Fri, 2019-07-26 15:08 |
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Designating Fold Tree Edges as Flexible or Rigid by nleroy » Tue, 2019-07-23 11:34 |
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2,529 |
by smlewis Tue, 2019-07-23 13:27 |
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PyMOLMover object has no attribute 'link' by nleroy » Mon, 2019-07-22 07:51 |
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1,071 |
by nleroy Mon, 2019-07-22 07:51 |
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Classic Relax by iGemBoulder » Fri, 2019-06-28 09:24 |
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2,244 |
by sheehajh Wed, 2019-07-17 12:43 |
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PyRosetta on a HPC by ac.research » Thu, 2019-03-14 02:00 |
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1,654 |
by rmoretti Wed, 2019-07-10 10:17 |
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set_torsion_angle error by yijietseng » Tue, 2019-07-09 12:43 |
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1,949 |
by yijietseng Wed, 2019-07-10 09:28 |
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Score bonus to hbond by yijietseng » Fri, 2019-07-05 12:28 |
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1,447 |
by rmoretti Tue, 2019-07-09 09:42 |
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Question about the error when using pyrosetta.distributed.io by cuiyoutian » Sun, 2019-05-19 00:54 |
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2,174 |
by rmoretti Mon, 2019-06-24 12:54 |
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ΔG Calculation with PyRosetta by Sandra » Tue, 2019-05-21 00:26 |
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1,940 |
by rmoretti Mon, 2019-06-24 12:47 |
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Residue is not compatible with cutpoints by iGemBoulder » Thu, 2019-06-06 08:57 |
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2,296 |
by iGemBoulder Tue, 2019-06-11 08:36 |
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individual residue score by yijietseng » Wed, 2019-05-29 09:59 |
2 |
1,997 |
by yijietseng Fri, 2019-05-31 12:21 |
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Relax with constraints by yijietseng » Tue, 2019-05-07 11:16 |
2 |
2,744 |
by yijietseng Wed, 2019-05-22 09:54 |
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Movers for unspecified DoF by tfobe » Wed, 2019-04-17 17:30 |
2 |
2,081 |
by tfobe Mon, 2019-05-20 16:05 |
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Error when trying to import 'get_secstruct' by quantumnumber » Thu, 2019-04-11 03:50 |
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4,512 |
by quantumnumber Fri, 2019-05-10 02:25 |
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Motif Graft Mover error by ac.research » Tue, 2019-03-26 13:25 |
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1,921 |
by rmoretti Thu, 2019-05-09 15:56 |
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Adding Custom AtomTypes to Pyrosetta by garrettameek » Wed, 2019-03-13 15:06 |
1 |
1,603 |
by rmoretti Thu, 2019-05-09 15:06 |
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DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply() by msellers » Wed, 2012-02-22 22:46 |
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5,004 |
by rmoretti Thu, 2019-05-09 15:03 |
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Need help figuring out the meaning and cause of an error by AleksanderK » Fri, 2019-05-03 11:02 |
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1,696 |
by rmoretti Thu, 2019-05-09 14:32 |
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Error with etable_atom_pair_energies() by yijietseng » Mon, 2019-01-28 14:00 |
2 |
2,904 |
by yijietseng Tue, 2019-05-07 11:02 |
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Noob question about optimizing a pose by AleksanderK » Fri, 2019-04-26 10:49 |
3 |
2,727 |
by AleksanderK Fri, 2019-05-03 10:57 |
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newbie question re pose syntax by Amy F » Mon, 2019-04-15 12:50 |
10 |
7,669 |
by jadolfbr Wed, 2019-04-24 10:12 |
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Error when using "generate_resfile_from_pose" function by zhangying1990 » Fri, 2019-01-25 00:45 |
1 |
2,030 |
by zhangying1990 Fri, 2019-02-01 00:44 |
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why two packing setting return different energy? by zhangying1990 » Wed, 2019-01-30 00:18 |
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2,258 |
by zhangying1990 Fri, 2019-02-01 00:30 |
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Changing the membrane Thickness (THKN) by jlapin » Mon, 2018-11-12 06:32 |
1 |
1,726 |
by ralford Wed, 2018-12-19 03:20 |
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Output several poses in a silent file by SenyorDrew » Tue, 2018-03-20 07:12 |
1 |
1,962 |
by Martin Floor Tue, 2018-12-11 05:43 |
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New Python 3.7 by ac.research » Wed, 2018-08-15 07:00 |
5 |
4,755 |
by MNP1986 Mon, 2018-12-03 04:02 |
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Reading poses from silent file that need a params file by Martin Floor » Mon, 2018-08-13 12:25 |
2 |
3,136 |
by Martin Floor Mon, 2018-08-27 10:51 |
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