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PyRosetta - General

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Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
2,112 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
1,223 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
1,066 by rmoretti
Fri, 2017-12-01 10:25
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
1,052 by rmoretti
Fri, 2017-12-01 10:10
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
862 by tschiex
Sun, 2017-11-05 08:29
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
2,713 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
1,780 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
1,831 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Where can I found the dictory of all function of Pyrosetta?
by sprinkle166 » Mon, 2017-10-16 13:58
2
1,608 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic Fragment Picking in PyRosetta
by ac.research » Thu, 2017-08-31 04:48
9
6,226 by rmoretti
Tue, 2017-10-10 09:16
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
2,251 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
3,278 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
4,564 by rmoretti
Tue, 2017-09-05 10:05
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
1,725 by rmoretti
Mon, 2017-09-04 09:52
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,983 by Sergey
Thu, 2017-08-31 04:39
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
4,179 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic Fragment Quality
by ac.research » Mon, 2017-07-10 10:23
9
4,816 by ac.research
Fri, 2017-07-14 12:55
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
2,948 by rmoretti
Thu, 2017-07-06 12:49
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
1,995 by ac.research
Thu, 2017-07-06 11:09
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
6,122 by ac.research
Wed, 2017-07-05 16:59
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
2,004 by ac.research
Fri, 2017-06-30 05:44
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,583 by parmef
Sat, 2017-06-24 03:18
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
2,212 by lah435
Fri, 2017-06-16 12:24
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,940 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Fold Tutorial
by ac.research » Sat, 2017-06-03 19:39
7
5,550 by smlewis
Sat, 2017-06-10 15:15
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,769 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
3,791 by jshen2
Sat, 2017-05-13 08:14
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
2,729 by gerdos
Fri, 2017-04-21 01:53
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
3,636 by gerdos
Tue, 2017-04-18 10:15
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
1,391 by Sergey
Tue, 2017-01-31 13:42
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
2,645 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50
9
5,728 by dsim
Tue, 2016-11-22 08:11
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
4,067 by rmoretti
Mon, 2016-11-14 13:21
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
1,401 by Labonte
Thu, 2016-10-06 14:05
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
5,609 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
1,486 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
4,340 by smlewis
Wed, 2016-08-24 14:23
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
1,965 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
5,896 by seanle24245
Fri, 2016-07-22 06:53
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
1,479 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
5,693 by seanle24245
Sun, 2016-06-19 18:30
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
3,659 by rmoretti
Fri, 2016-06-17 09:25
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,652 by LiorZ
Fri, 2016-06-17 08:20
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
5,473 by rmoretti
Fri, 2016-04-29 09:48
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
11,324 by rmoretti
Thu, 2016-02-18 14:22
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
1,873 by rmoretti
Wed, 2015-12-16 11:25
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
3,040 by rmoretti
Tue, 2015-12-01 15:18
Normal topic How does Rosetta select atom pairs for Lennard Jones Potential calculations?
by bowang2013 » Thu, 2015-10-29 08:04
4
4,077 by smlewis
Tue, 2015-11-03 09:17
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
2,436 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
2,017 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,868 by rmoretti
Mon, 2015-10-19 08:25
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,793 by rmoretti
Wed, 2015-10-07 16:35
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
3,149 by galvaner
Mon, 2015-09-21 13:37
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
5,674 by MarkW
Mon, 2015-08-24 04:43
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
3,174 by Sergey
Wed, 2015-08-19 15:47
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
8,714 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
1,838 by rmoretti
Wed, 2015-08-12 10:29
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
3,511 by StevPChem
Thu, 2015-08-06 11:07
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
2,996 by kim-nguyen
Fri, 2015-07-24 23:04
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59
24
30,008 by msun
Fri, 2015-07-10 11:03
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
1,722 by rmoretti
Fri, 2015-04-24 13:17
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
3,636 by cossio
Wed, 2015-04-15 12:31
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
4,267 by Sergey
Fri, 2015-04-10 11:25
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
3,814 by Sergey
Fri, 2015-03-27 14:34
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
5,866 by Sergey
Wed, 2015-03-18 11:22
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
1,968 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
2,349 by protos_heis
Fri, 2015-02-27 13:38
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
1,577 by MarkW
Sun, 2015-02-08 14:14
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
9,729 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
4,159 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,240 by cossio
Fri, 2014-11-28 05:05
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
2,509 by ajasja
Thu, 2014-10-30 08:32
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
2,915 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
3,286 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
5,503 by rmoretti
Mon, 2014-10-06 14:37
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
4,954 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
3,270 by rmoretti
Mon, 2014-09-29 00:06
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
2,129 by ajasja
Wed, 2014-09-24 08:57
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
3,411 by rmoretti
Tue, 2014-09-23 08:36
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
15,497 by ajasja
Mon, 2014-09-22 10:17
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
1,970 by ajasja
Mon, 2014-09-22 09:53
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
5,840 by ajasja
Mon, 2014-09-22 09:51
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
2,139 by rmoretti
Wed, 2014-09-17 07:29
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
3,324 by dsim
Mon, 2014-09-15 07:47
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
1,919 by Labonte
Mon, 2014-09-08 09:13
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
4,355 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
2,725 by lanselibai
Tue, 2014-08-26 01:49
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,986 by ajasja
Fri, 2014-08-22 08:32
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,982 by lah435
Mon, 2014-08-18 17:23
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
6,399 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
1,906 by Sergey
Thu, 2014-08-14 11:54
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,359 by lanselibai
Wed, 2014-08-13 13:24
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
1,555 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
5,540 by rmoretti
Mon, 2014-07-21 11:15
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
3,764 by nawsad
Sun, 2014-07-13 00:49
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
4,298 by ajasja
Thu, 2014-07-03 05:53
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,413 by ajasja
Thu, 2014-07-03 05:36
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
2,924 by ajasja
Sat, 2014-06-21 11:57
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
3,037 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
2,419 by rmoretti
Mon, 2014-04-21 06:48
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