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PyRosetta - General

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Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
7,354 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
2,224 by Sergey
Thu, 2014-08-14 11:54
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,511 by lanselibai
Wed, 2014-08-13 13:24
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
1,807 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
6,183 by rmoretti
Mon, 2014-07-21 11:15
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
4,357 by nawsad
Sun, 2014-07-13 00:49
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
4,947 by ajasja
Thu, 2014-07-03 05:53
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,819 by ajasja
Thu, 2014-07-03 05:36
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
3,370 by ajasja
Sat, 2014-06-21 11:57
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
3,469 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
2,727 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
3,698 by protos_heis
Mon, 2014-04-21 06:48
Normal topic How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types
by AyushGoyal » Wed, 2014-01-22 16:24
7
7,724 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
8,843 by rmoretti
Mon, 2014-04-21 06:48
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
2,460 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42
3
3,256 by Sergey
Mon, 2014-04-21 06:48
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37
7
7,962 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fragments file
by Run » Tue, 2013-11-26 02:40
4
4,307 by rmoretti
Mon, 2014-04-21 06:48
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
2,331 by rmoretti
Mon, 2014-04-21 06:48
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
4,508 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
3,600 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Error in loop modeling protocol
by jai_INMAS » Fri, 2013-10-18 07:08
5
5,144 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
3,575 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25
1
1,913 by rmoretti
Mon, 2014-04-21 06:48
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,952 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
3,837 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,511 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06
1
1,882 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
2,249 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
3,869 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25
1
2,133 by smlewis
Mon, 2014-04-21 06:48
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,935 by Sergey
Mon, 2014-04-21 06:48
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
5,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51
4
5,760 by Sergey
Mon, 2014-04-21 06:48
Hot topic Energy Minimization
by bharat_46010 » Wed, 2013-07-31 20:45
24
26,685 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
3,907 by Victor
Mon, 2014-04-21 06:48
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
2,328 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how can we calculate Rosetta score on some decoy set?
by mirzaie » Wed, 2013-06-19 08:43
13
11,988 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
3,958 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
11,415 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
2,120 by jadolfbr
Mon, 2014-04-21 06:48
Hot topic HBondEnergy
by bharat_46010 » Wed, 2013-05-15 19:03
15
14,720 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
2,278 by linucks
Mon, 2014-04-21 06:47
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56
6
5,405 by LiorZ
Mon, 2014-04-21 06:47
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
6,137 by eberhardt
Mon, 2014-04-21 06:47
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,868 by Sergey
Mon, 2014-04-21 06:47
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21
4
5,465 by smlewis
Mon, 2014-04-21 06:47
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29
5
5,334 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
3,435 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
3,113 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
3,858 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
3,198 by lah435
Mon, 2014-04-21 06:47
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02
8
9,131 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37
8
6,252 by xfliu
Mon, 2014-04-21 06:47
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
2,653 by xfliu
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
2,112 by smlewis
Mon, 2014-04-21 06:47
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
23,929 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06
10
8,922 by ggyimesi
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
5,868 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to read a silent file ?
by Anonymous » Wed, 2012-06-27 09:34
12
9,702 by Anonymous
Mon, 2014-04-21 06:47
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
7,307 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
4,833 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
5,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
3,435 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21
6
5,014 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13
2
3,745 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
1,833 by xfliu
Mon, 2014-04-21 06:47
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
5,317 by Sergey
Mon, 2014-04-21 06:47
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33
5
4,870 by xfliu
Mon, 2014-04-21 06:47
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
2,059 by smlewis
Mon, 2014-04-21 06:47
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
4,468 by AOK
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01
5
5,504 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,928 by smlewis
Mon, 2014-04-21 06:47
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
2,566 by smlewis
Mon, 2014-04-21 06:47
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
5,208 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,947 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
3,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54
6
5,100 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
2,007 by Sergey
Mon, 2014-04-21 06:47
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
4,200 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
3,820 by cno
Mon, 2014-04-21 06:47
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
3,998 by Victor
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,337 by Victor
Mon, 2014-04-21 06:47
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,911 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
4,740 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47
4
3,886 by smlewis
Mon, 2014-04-21 06:47
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25
1
2,279 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,487 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
2,551 by Sergey
Mon, 2014-04-21 06:47
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
2,929 by evo_umich
Mon, 2014-04-21 06:47
Normal topic ∆G calculation script for protein and mutation of AA at each residue
by ara » Tue, 2011-10-25 13:57
6
6,949 by ara
Mon, 2014-04-21 06:47
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
1,860 by ast
Mon, 2014-04-21 06:47
Normal topic Errors when movers put in a function
by rfschleif » Sat, 2011-10-08 08:41
5
4,226 by msellers
Mon, 2014-04-21 06:47
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20
3
4,051 by evo_umich
Mon, 2014-04-21 06:47
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
2,082 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
3,517 by Stefan
Mon, 2014-04-21 06:47
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
2,236 by smlewis
Mon, 2014-04-21 06:47
Hot topic Creating a vector1 of AtomID objects
by msellers » Mon, 2011-07-18 06:24
19
14,293 by msellers
Mon, 2014-04-21 06:47
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57
3
3,764 by msellers
Mon, 2014-04-21 06:47
Normal topic (1) Score pose, (2) move atom, (3) score pose
by msellers » Fri, 2011-07-15 11:04
6
5,114 by msellers
Mon, 2014-04-21 06:47
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