You are here

Home » Forums » PyRosetta

PyRosetta - General

Log in to post new content in the forum.
Topic / Topic starter Replies Views Last postsort ascending
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24 		15
 20,277 by ajasja
Mon, 2014-09-22 10:17
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14 		2
 2,739 by ajasja
Mon, 2014-09-22 09:53
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09 		4
 7,071 by ajasja
Mon, 2014-09-22 09:51
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26 		1
 2,938 by rmoretti
Wed, 2014-09-17 07:29
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02 		4
 4,503 by dsim
Mon, 2014-09-15 07:47
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22 		1
 2,479 by Labonte
Mon, 2014-09-08 09:13
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34 		1
 5,337 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05 		2
 3,631 by lanselibai
Tue, 2014-08-26 01:49
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50 		2
 3,932 by ajasja
Fri, 2014-08-22 08:32
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53 		2
 3,688 by lah435
Mon, 2014-08-18 17:23
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55 		7
 8,301 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26 		1
 2,573 by Sergey
Thu, 2014-08-14 11:54
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24 		0
 1,716 by lanselibai
Wed, 2014-08-13 13:24
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06 		1
 2,091 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43 		5
 6,923 by rmoretti
Mon, 2014-07-21 11:15
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59 		4
 5,000 by nawsad
Sun, 2014-07-13 00:49
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16 		4
 5,626 by ajasja
Thu, 2014-07-03 05:53
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14 		2
 3,285 by ajasja
Thu, 2014-07-03 05:36
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30 		2
 3,830 by ajasja
Sat, 2014-06-21 11:57
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12 		3
 3,932 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types
by AyushGoyal » Wed, 2014-01-22 16:24 		7
 8,720 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52 		1
 3,096 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21 		4
 4,272 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42 		3
 3,758 by Sergey
Mon, 2014-04-21 06:48
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51 		1
 2,621 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fragments file
by Run » Tue, 2013-11-26 02:40 		4
 4,893 by rmoretti
Mon, 2014-04-21 06:48
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31 		2
 2,846 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37 		7
 8,920 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43 		5
 10,145 by rmoretti
Mon, 2014-04-21 06:48
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30 		3
 5,083 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19 		3
 4,114 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Error in loop modeling protocol
by jai_INMAS » Fri, 2013-10-18 07:08 		5
 5,826 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41 		3
 4,074 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25 		1
 2,196 by rmoretti
Mon, 2014-04-21 06:48
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49 		2
 3,339 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20 		3
 4,317 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40 		1
 2,822 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06 		1
 2,199 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44 		1
 2,576 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01 		3
 4,371 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25 		1
 2,479 by smlewis
Mon, 2014-04-21 06:48
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07 		2
 3,314 by Sergey
Mon, 2014-04-21 06:48
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11 		1
 5,665 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51 		4
 6,460 by Sergey
Mon, 2014-04-21 06:48
Hot topic Energy Minimization
by bharat_46010 » Wed, 2013-07-31 20:45 		24
 29,869 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33 		1
 2,641 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how can we calculate Rosetta score on some decoy set?
by mirzaie » Wed, 2013-06-19 08:43 		13
 13,607 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55 		1
 4,452 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51 		12
 12,843 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15 		1
 2,445 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11 		4
 4,498 by Victor
Mon, 2014-04-21 06:48
Hot topic HBondEnergy
by bharat_46010 » Wed, 2013-05-15 19:03 		15
 16,598 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31 		1
 2,605 by linucks
Mon, 2014-04-21 06:47
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56 		6
 6,139 by LiorZ
Mon, 2014-04-21 06:47
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59 		2
 4,284 by Sergey
Mon, 2014-04-21 06:47
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21 		4
 6,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29 		5
 6,033 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31 		2
 3,860 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23 		3
 3,639 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01 		4
 6,838 by eberhardt
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40 		3
 4,500 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45 		2
 3,586 by lah435
Mon, 2014-04-21 06:47
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02 		8
 10,309 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37 		8
 7,203 by xfliu
Mon, 2014-04-21 06:47
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12 		2
 3,082 by xfliu
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40 		1
 2,457 by smlewis
Mon, 2014-04-21 06:47
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24 		29
 27,028 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06 		10
 10,214 by ggyimesi
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38 		3
 6,490 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to read a silent file ?
by Anonymous » Wed, 2012-06-27 09:34 		12
 11,291 by Anonymous
Mon, 2014-04-21 06:47
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51 		9
 8,349 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44 		3
 5,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23 		5
 5,854 by smlewis
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46 		3
 4,006 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13 		2
 4,308 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30 		0
 2,087 by xfliu
Mon, 2014-04-21 06:47
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27 		7
 6,207 by Sergey
Mon, 2014-04-21 06:47
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33 		5
 5,636 by xfliu
Mon, 2014-04-21 06:47
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42 		1
 2,375 by smlewis
Mon, 2014-04-21 06:47
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06 		5
 5,175 by AOK
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01 		5
 6,201 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21 		6
 5,797 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15 		3
 3,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12 		1
 2,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27 		5
 5,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04 		1
 4,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54 		6
 5,905 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21 		1
 2,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15 		1
 2,338 by Sergey
Mon, 2014-04-21 06:47
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33 		5
 4,886 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24 		2
 4,289 by cno
Mon, 2014-04-21 06:47
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52 		3
 4,512 by Victor
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36 		0
 1,541 by Victor
Mon, 2014-04-21 06:47
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04 		3
 3,450 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35 		6
 5,527 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47 		4
 4,544 by smlewis
Mon, 2014-04-21 06:47
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25 		1
 2,584 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51 		0
 1,696 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54 		2
 2,960 by Sergey
Mon, 2014-04-21 06:47
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08 		2
 3,382 by evo_umich
Mon, 2014-04-21 06:47
Log in to post new content in the forum.
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - PyRosetta - General