I searched for a basic protocol that can be used to minimize my four residue turn structure and I didn't find any. Therefore, I used the following method :-
scorefxn = create_score_function_ws_patch("standard","score12")
mm = MoveMap()
pose_move_map.set_chi(True) ## For side chain minimization
mm.set_bb_true_range(1,4) ## Here range means 1 to 4 or the minimzation is applied only to residues 1 and4 ??
minmover = MinMover(mm, scorefxn, 'dfpmin', 10, True) ## I don't know the meaning of dfpmin,10,True. I saw it somewhere and used it
After using this protocol the energy of the initial structure which was 20 came down to 6 ... But the energy is still positive. Here can we compare the positive energies or not ??
An another query is regarding the link for the documentation of various functions in pyrosetta, for eg. ( MinMover(mm, scorefxn, 'dfpmin', 10, True))