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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
19,632 by Sergey
Fri, 2015-09-04 16:14
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
2,430 by ajasja
Wed, 2014-09-24 08:57
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39
0
1,565 by blubbi
Mon, 2014-04-21 06:47
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
610 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,566 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26
0
525 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02
0
1,307 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
1,084 by ac.research
Thu, 2018-03-29 07:50
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37
0
1,427 by tevang
Mon, 2014-04-21 06:47
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58
0
1,492 by cbala
Mon, 2014-04-21 06:47
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16
0
1,541 by sharang
Mon, 2014-04-21 06:47
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
580 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,511 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39
0
377 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58
0
1,548 by Sergey
Mon, 2014-04-21 06:47
Normal topic Gunn fragment insertion
by jadolfbr » Sun, 2010-02-28 09:39
0
1,434 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to tell where and what fragment or rotamer was inserted?
by charlie.strauss » Wed, 2010-01-27 10:36
0
1,415 by charlie.strauss
Mon, 2014-04-21 06:47
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29
0
2,610 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
1,833 by xfliu
Mon, 2014-04-21 06:47
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
778 by matteoferla
Sun, 2020-03-01 02:38
Normal topic Frequently Asked Questions
by sid » Fri, 2009-10-02 09:00
0
1,933 by sid
Mon, 2014-04-21 06:47
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
1,860 by ast
Mon, 2014-04-21 06:47
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
1,736 by MarkW
Sun, 2015-02-08 14:14
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
791 by nleroy
Mon, 2019-07-22 07:51
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43
0
1,550 by jwillis
Mon, 2014-04-21 06:47
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34
0
553 by publicclass
Thu, 2020-11-05 09:34
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37
0
803 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
1,573 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54
0
1,405 by jurkm
Mon, 2014-04-21 06:47
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00
0
568 by mm
Wed, 2020-07-22 03:02
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,600 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44
0
897 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
261 by Roberto
Thu, 2022-01-06 01:43
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57
0
1,402 by batch2k
Mon, 2014-04-21 06:47
Normal topic dump_pdb problems
by srballard » Fri, 2010-05-28 14:04
0
1,857 by srballard
Mon, 2014-04-21 06:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54
0
1,395 by sid
Mon, 2014-04-21 06:47
Normal topic small molecule docking
by sharang » Mon, 2010-08-02 14:57
0
1,584 by sharang
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,487 by Sergey
Mon, 2014-04-21 06:47
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
1,035 by tschiex
Sun, 2017-11-05 08:29
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
886 by matteoferla
Wed, 2021-04-07 06:50
Normal topic Updating Coords
by jadolfbr » Sat, 2010-01-30 10:33
0
1,613 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,337 by Victor
Mon, 2014-04-21 06:47
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
1,294 by sylvia
Mon, 2014-04-21 06:47
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02
0
596 by jetu20
Sun, 2020-10-11 21:02
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
637 by wentlewi
Thu, 2020-05-07 12:33
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02
0
975 by matteoferla
Mon, 2020-08-24 09:02
Normal topic any examples of calling SnugDock from pyrosetta?
by antonkulaga » Thu, 2021-12-23 16:13
1
405 by matteoferla
Mon, 2022-01-10 07:14
Normal topic [Solved] Docking to a trimer
by batch2k » Wed, 2010-02-17 02:18
1
1,808 by batch2k
Mon, 2014-04-21 06:47
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
2,120 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Folding Video
by ac.research » Sat, 2018-05-12 09:19
1
1,473 by rmoretti
Sat, 2018-06-30 02:38
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
2,331 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
2,163 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,609 by cossio
Fri, 2014-11-28 05:05
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
2,082 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50
1
1,120 by rmoretti
Mon, 2021-03-29 06:53
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54
1
1,937 by sid
Mon, 2014-04-21 06:47
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00
1
2,394 by smlewis
Mon, 2014-04-21 06:47
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
2,350 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
1,262 by rmoretti
Wed, 2019-07-10 10:17
Normal topic ClassicRelax with ligand
by S » Mon, 2010-09-27 07:55
1
1,829 by smlewis
Mon, 2014-04-21 06:47
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by aushawxian » Sun, 2018-01-28 20:21
1
1,567 by walcob
Mon, 2018-01-29 11:22
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,947 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
2,138 by rmoretti
Wed, 2015-08-12 10:29
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
2,783 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
4,815 by rmoretti
Thu, 2014-09-04 11:36
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
1,225 by matteoferla
Thu, 2020-04-30 12:04
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
2,172 by Sergey
Mon, 2014-04-21 06:47
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
2,249 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
2,727 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Falling at the first hurdle
by pardave » Tue, 2010-01-05 00:53
1
2,034 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
1,629 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45
1
1,898 by rmoretti
Thu, 2014-04-03 07:27
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
2,677 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
2,007 by Sergey
Mon, 2014-04-21 06:47
Normal topic How to set options under PyRosetta
by lennylv » Thu, 2011-01-06 18:11
1
3,236 by Sergey
Mon, 2014-04-21 06:47
Normal topic segfault in loop
by reve_etrange » Sat, 2010-02-13 21:49
1
1,837 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
2,211 by rmoretti
Wed, 2015-12-16 11:25
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
2,328 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How does min_mover work?
by anidude » Fri, 2022-03-04 07:30
1
347 by matteoferla
Sun, 2022-03-20 02:53
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
2,236 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06
1
934 by matteoferla
Wed, 2020-07-01 05:30
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
2,153 by rmoretti
Mon, 2017-09-04 09:52
Normal topic How do I insert or delete residues into specific locations?
by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03
1
829 by matteoferla
Tue, 2021-01-05 03:53
Normal topic how do I compile the python bindings for rosetta3 for python2.5 linux x86_64
by tru » Wed, 2009-11-25 11:38
1
1,900 by luki
Mon, 2014-04-21 06:47
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
1,341 by rmoretti
Fri, 2017-12-01 10:25
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
2,194 by Labonte
Mon, 2014-09-08 09:13
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
1,217 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
2,641 by smlewis
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
2,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
1,415 by rmoretti
Sat, 2017-12-16 10:47
Normal topic [Solved]NameError
by nunesjulioc » Fri, 2010-02-05 08:26
1
1,904 by AlexI
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
3,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
1,274 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
2,364 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
1,085 by rmoretti
Tue, 2019-07-09 09:42
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
1,570 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
886 by smlewis
Tue, 2020-09-29 12:00
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
1,744 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25
1
2,133 by smlewis
Mon, 2014-04-21 06:48
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
1,564 by rmoretti
Sat, 2018-06-30 02:37

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