You are here
PyRosetta - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Calculate residue-residue pairwise energies by pachecoj » Tue, 2013-07-23 04:51 |
4 |
6,811 |
by Sergey Mon, 2014-04-21 06:48 |
|
|
Quadratic Function for Distance Constraints? by protos_heis » Mon, 2014-01-27 06:21 |
4 |
4,515 |
by protos_heis Mon, 2014-04-21 06:48 |
|
|
De novo loop modeling using pyrosetta by bharat_46010 » Sun, 2011-01-16 17:38 |
4 |
5,866 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Inconsistencies in full atom energy calculations by dsim » Tue, 2014-07-29 06:02 |
4 |
4,784 |
by dsim Mon, 2014-09-15 07:47 |
|
|
Protein docking with PyRosetta Error! by Apiwat » Sat, 2014-01-11 23:32 |
4 |
7,132 |
by shivarawat115 Mon, 2022-04-11 16:03 |
|
|
How do you combine two .pdb protein structure files of the same protein? by nasim.soltani58 » Sun, 2020-11-22 23:14 |
4 |
5,696 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
|
|
Add new atom by eberhardt » Thu, 2013-03-14 02:01 |
4 |
7,169 |
by eberhardt Mon, 2014-04-21 06:47 |
|
|
cartesian delta delta G by patcD » Wed, 2021-02-10 01:46 |
4 |
4,123 |
by arjan-hada Sat, 2024-01-27 05:45 |
|
|
Does Rosetta scoring function can distinguish good structure from bad one? by Victor » Sun, 2013-06-16 21:11 |
4 |
4,761 |
by Victor Mon, 2014-04-21 06:48 |
|
|
Generating Atom Pair Constraints by Peik » Wed, 2020-08-05 15:39 |
3 |
2,764 |
by Peik Thu, 2020-08-06 11:50 |
|
|
Namespace PyRosetta Build for Windows? by protos_heis » Sat, 2015-08-15 10:49 |
3 |
4,447 |
by Sergey Wed, 2015-08-19 15:47 |
|
|
Problems with SmoothFragmentMover by epalovcak » Wed, 2013-10-02 09:20 |
3 |
4,560 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Deprotonated LYS by Arik » Wed, 2011-06-22 16:34 |
3 |
4,881 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
change dihedral angles of any residue by bharat_46010 » Fri, 2013-11-15 00:30 |
3 |
5,394 |
by bharat_46010 Mon, 2014-04-21 06:48 |
|
|
adding nucleotides to a dna model by jadolfbr » Wed, 2012-12-05 11:40 |
3 |
4,767 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Resfile Error by ac.research » Wed, 2019-07-17 13:25 |
3 |
4,907 |
by vmulligan Fri, 2019-07-26 15:08 |
|
|
Energy of individual loop/region by jadolfbr » Mon, 2012-04-02 13:15 |
3 |
3,675 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Writing out individual residues to a pdbfile by SenyorDrew » Thu, 2016-12-08 07:33 |
3 |
3,940 |
by SenyorDrew Thu, 2016-12-08 13:10 |
|
|
Best Way to Append/Insert Residue by jaulicino » Tue, 2020-07-21 10:24 |
3 |
3,868 |
by matteoferla Sat, 2020-07-25 03:52 |
|
|
BluePrintBDRMover set_atom_type error by ac.research » Sat, 2017-12-09 02:16 |
3 |
3,350 |
by rmoretti Sat, 2017-12-16 14:06 |
|
|
Questions on rotamer-rotamer energies by pachecoj » Fri, 2013-07-26 05:01 |
3 |
4,596 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
generate_nonstandard_residue_set Exception by lah435 » Tue, 2017-06-13 18:28 |
3 |
3,493 |
by lah435 Fri, 2017-06-16 12:24 |
|
|
Symmetric pose initialization fails by gudmal » Tue, 2013-11-26 06:42 |
3 |
3,971 |
by Sergey Mon, 2014-04-21 06:48 |
|
|
Dock antibody at the epitope of antigen by styang » Fri, 2012-06-22 05:44 |
3 |
5,563 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to fold membrane protein in PyRosetta? by assignfit » Fri, 2011-02-25 21:39 |
3 |
4,293 |
by assignfit Mon, 2014-04-21 06:47 |
|
|
Gradient Descent by nasim.soltani58 » Thu, 2020-10-01 16:02 |
3 |
2,621 |
by vmulligan Tue, 2020-10-06 15:13 |
|
|
Documentation of ``mysterious'' protocols by ñ » Wed, 2013-10-30 08:19 |
3 |
4,343 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Using pose.set_xyz() to move chains causes increase in only pro_close energy by msellers » Mon, 2011-07-25 06:57 |
3 |
4,512 |
by msellers Mon, 2014-04-21 06:47 |
|
|
PyRosetta + PyMol by reve_etrange » Mon, 2009-11-23 16:44 |
3 |
4,696 |
by reve_etrange Mon, 2014-04-21 06:47 |
|
|
pose.replace_residue() & incorrect scoring by msun » Tue, 2015-10-06 10:51 |
3 |
4,117 |
by rmoretti Wed, 2015-10-07 16:35 |
|
|
[Solved] Docking in metalloprotease (Zinc problem) by zgcarvalho » Wed, 2010-01-20 16:04 |
3 |
5,210 |
by reve_etrange Mon, 2014-04-21 06:47 |
|
|
rmsd and Lrmsd in loop modeling by Victor » Tue, 2012-01-24 09:52 |
3 |
4,729 |
by Victor Mon, 2014-04-21 06:47 |
|
|
Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score by msellers » Wed, 2011-05-11 06:24 |
3 |
4,329 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Designating Fold Tree Edges as Flexible or Rigid by nleroy » Tue, 2019-07-23 11:34 |
3 |
3,041 |
by smlewis Tue, 2019-07-23 13:27 |
|
|
Iterating over graph edges in PyRosetta. by ajasja » Mon, 2014-09-22 07:21 |
3 |
4,670 |
by rmoretti Mon, 2014-09-29 00:06 |
|
|
Using OStream objects in PyRosetta by ggyimesi » Mon, 2014-02-10 03:10 |
3 |
4,639 |
by ggyimesi Mon, 2014-02-17 09:52 |
|
|
Atom-wise energy terms from nearest N-neighbors by jasiozaucha » Thu, 2021-03-25 14:49 |
3 |
2,389 |
by matteoferla Fri, 2021-05-28 02:41 |
|
|
fragment building by StevPChem » Tue, 2015-08-04 09:01 |
3 |
4,693 |
by StevPChem Thu, 2015-08-06 11:07 |
|
|
interaction energies between atoms by Stefan » Thu, 2011-04-14 06:15 |
3 |
6,036 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Regarding the Documentation of Rosetta and PyRosetta by jai_INMAS » Tue, 2013-10-22 23:41 |
3 |
4,306 |
by jai_INMAS Mon, 2014-04-21 06:48 |
|
|
Getting chi rotamers by ajasja » Tue, 2014-08-26 12:11 |
3 |
4,894 |
by rmoretti Tue, 2014-09-23 08:36 |
|
|
Simple mover that holds lowest energy pose by jadolfbr » Fri, 2013-03-15 13:23 |
3 |
3,873 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
ERROR: unrecognized element Rp when using pose_from_pdb by johnnytam100 » Thu, 2020-07-09 02:53 |
3 |
3,046 |
by rmoretti Thu, 2020-07-09 08:35 |
|
|
set constraints by zgcarvalho » Wed, 2010-02-24 09:42 |
3 |
3,659 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Allowing cysteines to repack by eyliaw » Thu, 2012-07-05 14:46 |
3 |
4,258 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
"No Python class registered..." when trying to access SymDofs by pitmand » Tue, 2015-03-17 14:29 |
3 |
5,185 |
by Sergey Fri, 2015-03-27 14:34 |
|
|
input_pdb by evo_umich » Sat, 2011-10-01 14:20 |
3 |
4,807 |
by evo_umich Mon, 2014-04-21 06:47 |
|
|
How to create an ObjexxFCL FArray? by matteoferla » Tue, 2020-08-18 03:22 |
3 |
2,319 |
by matteoferla Thu, 2021-07-08 06:02 |
|
|
Rosetta score vs Experiment by thorx020 » Tue, 2012-09-04 12:38 |
3 |
6,768 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
add missing residues into rna by galvaner » Tue, 2015-09-15 16:41 |
3 |
4,648 |
by galvaner Mon, 2015-09-21 13:37 |
|
|
Dunbrack Library by jadolfbr » Tue, 2011-05-10 13:59 |
3 |
4,262 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
ClassicRelax: how to block the backbone by oppopomoz » Fri, 2015-11-27 08:17 |
3 |
4,328 |
by rmoretti Tue, 2015-12-01 15:18 |
|
|
preparation the fragment files for mutants by Victor » Wed, 2012-02-22 11:04 |
3 |
3,672 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Generating random number using numeric.random by resiros » Thu, 2014-10-23 09:25 |
3 |
4,136 |
by rmoretti Wed, 2014-10-29 10:00 |
|
|
RosettaModel blueprint for PyRosetta by bbrown11 » Tue, 2015-03-03 13:53 |
3 |
4,707 |
by matteoferla Thu, 2021-04-29 06:30 |
|
|
Getting which rigid body a residue belongs to? by JuliusSu » Thu, 2014-04-17 21:12 |
3 |
4,182 |
by jadolfbr Mon, 2014-04-21 17:28 |
|
|
Username and Password for download link? by juden99 » Thu, 2011-02-17 03:30 |
3 |
4,045 |
by juden99 Mon, 2014-04-21 06:47 |
|
|
Noob question about optimizing a pose by AleksanderK » Fri, 2019-04-26 10:49 |
3 |
3,232 |
by AleksanderK Fri, 2019-05-03 10:57 |
|
|
Disuplhide bonds by batch2k » Tue, 2009-12-15 09:57 |
3 |
5,009 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
PyRosetta memory footprint by LiorZ » Thu, 2016-06-16 04:36 |
3 |
4,111 |
by LiorZ Fri, 2016-06-17 08:20 |
|
|
Rosetta get_fa_scorefxn() by israeldesta » Thu, 2019-10-31 10:18 |
3 |
4,755 |
by jadolfbr Thu, 2019-11-14 15:33 |
|
|
About missing disulfide partners for residue... by Mon » Wed, 2014-12-17 05:37 |
3 |
5,952 |
by jadolfbr Thu, 2014-12-18 09:37 |
|
|
Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library by AyushGoyal » Mon, 2014-02-24 22:18 |
3 |
5,142 |
by rmoretti Wed, 2014-02-26 09:40 |
|
|
Mistake about rosetta.init() by sprinkle166 » Tue, 2017-09-26 09:46 |
3 |
3,748 |
by sprinkle166 Wed, 2017-09-27 09:17 |
|
|
Peptide design by AOK » Thu, 2011-02-03 11:35 |
3 |
4,887 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
installing PyRosetta on Mac OSX 10.6 and Linux in VMWare by sid » Tue, 2009-10-06 09:04 |
2 |
4,278 |
by reve_etrange Mon, 2014-04-21 06:47 |
|
|
libmini.dylib by evo_umich » Fri, 2011-09-23 14:08 |
2 |
3,583 |
by evo_umich Mon, 2014-04-21 06:47 |
|
|
How to pop off terminus variants by xfliu » Mon, 2012-09-03 03:12 |
2 |
3,253 |
by xfliu Mon, 2014-04-21 06:47 |
|
|
Constraint files, section formatted by srballard » Fri, 2010-11-05 11:55 |
2 |
2,992 |
by drluca77 Mon, 2014-04-21 06:47 |
|
|
eval_ci_2b() with hydrogen bonds by TensorDuck » Fri, 2018-03-30 14:05 |
2 |
3,025 |
by TensorDuck Mon, 2018-04-02 13:41 |
|
|
Acessing energies terms from energy.show() table by João Sartori » Mon, 2022-02-07 07:56 |
2 |
1,486 |
by João Sartori Wed, 2022-02-09 04:35 |
|
|
PyRosetta Global Docking by ac.research » Sat, 2017-08-26 03:31 |
2 |
3,167 |
by Sergey Thu, 2017-08-31 04:39 |
|
|
PyRosetta coding subtleties by lah435 » Wed, 2013-03-27 02:59 |
2 |
4,450 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Glycan in IgG1 Fc by seanle24245 » Fri, 2016-07-22 07:50 |
2 |
2,922 |
by jadolfbr Fri, 2016-07-22 10:29 |
|
|
Applying RMSD constraints using pyrosetta or Rosettascripts by chenna » Thu, 2023-02-09 05:37 |
2 |
1,732 |
by chenna Fri, 2023-02-10 05:37 |
|
|
Error with etable_atom_pair_energies() by yijietseng » Mon, 2019-01-28 14:00 |
2 |
3,362 |
by yijietseng Tue, 2019-05-07 11:02 |
|
|
Getting interface residues? by JuliusSu » Wed, 2014-04-16 21:58 |
2 |
3,114 |
by JuliusSu Thu, 2014-04-17 18:34 |
|
|
Using InterfaceSasaFilter by SenyorDrew » Thu, 2017-10-26 07:53 |
2 |
2,830 |
by SenyorDrew Thu, 2017-10-26 13:30 |
|
|
Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
2 |
1,967 |
by vmulligan Mon, 2021-03-29 10:39 |
|
|
Error in core/scoring/methods/VDW_Energy.cc line: 169 by pepfolder » Thu, 2012-05-31 11:13 |
2 |
4,540 |
by pepfolder Mon, 2014-04-21 06:47 |
|
|
Movers for unspecified DoF by tfobe » Wed, 2019-04-17 17:30 |
2 |
2,539 |
by tfobe Mon, 2019-05-20 16:05 |
|
|
New Windows build is available for download by Sergey » Fri, 2014-07-18 13:50 |
2 |
4,124 |
by ajasja Fri, 2014-08-22 08:32 |
|
|
pyrosetta die slow by Eden » Sun, 2021-06-13 00:05 |
2 |
1,655 |
by Eden Mon, 2021-06-14 23:10 |
|
|
How to determine interface residues by rbehan » Wed, 2015-10-14 11:25 |
2 |
5,544 |
by rmoretti Fri, 2016-06-17 09:25 |
|
|
Residue is not compatible with cutpoints by iGemBoulder » Thu, 2019-06-06 08:57 |
2 |
2,727 |
by iGemBoulder Tue, 2019-06-11 08:36 |
|
|
how do i unding properly? by patcD » Fri, 2020-11-20 00:38 |
2 |
2,339 |
by matteoferla Fri, 2020-11-20 07:47 |
|
|
Interface Design by brettth » Wed, 2010-12-08 07:25 |
2 |
5,154 |
by SunH Mon, 2014-04-21 06:47 |
|
|
Modeling small molecules by iGemBoulder » Wed, 2019-09-18 11:53 |
2 |
2,495 |
by rmoretti Wed, 2019-09-18 14:24 |
|
|
Is this the intended behaviour? by Ken » Thu, 2022-05-05 14:59 |
2 |
2,753 |
by Ken Fri, 2022-05-06 07:03 |
|
|
Reading poses from silent file that need a params file by Martin Floor » Mon, 2018-08-13 12:25 |
2 |
3,492 |
by Martin Floor Mon, 2018-08-27 10:51 |
|
|
Beta-Hairpin Design by bharat_46010 » Wed, 2014-02-12 23:18 |
2 |
4,058 |
by bharat_46010 Thu, 2014-02-13 16:00 |
|
|
Rotamers one- and two-body energies by ajfmdm » Thu, 2024-04-04 00:48 |
2 |
291 |
by ajfmdm Mon, 2024-04-08 13:04 |
|
|
Capturing the output of scorefxn.show(pose) by ajasja » Fri, 2014-06-20 05:30 |
2 |
4,026 |
by ajasja Sat, 2014-06-21 11:57 |
|
|
Using ref2015 and talaris2014 in the same script by SenyorDrew » Wed, 2017-11-01 10:24 |
2 |
4,339 |
by SenyorDrew Wed, 2017-11-01 10:39 |
|
|
SASA of pose by ac.research » Mon, 2017-06-26 03:55 |
2 |
3,226 |
by ac.research Fri, 2017-06-30 05:44 |
|
|
Relax with constraints by yijietseng » Tue, 2019-05-07 11:16 |
2 |
3,306 |
by yijietseng Wed, 2019-05-22 09:54 |
|
|
Are there any plans to make PyRosetta directly functional on 64-bit architecture? by AndrewBworth » Fri, 2009-12-18 10:09 |
2 |
2,915 |
by sid Mon, 2014-04-21 06:47 |
|
|
restricted fast relax changes whole structure? by patcD » Wed, 2021-08-25 02:05 |
2 |
2,121 |
by patcD Wed, 2021-09-01 03:30 |
|
|
Define custom potential? by rfschleif » Fri, 2011-05-06 11:25 |
2 |
3,848 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Failure appending a residue by rfschleif » Thu, 2011-06-16 10:53 |
2 |
3,890 |
by smlewis Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
