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Rosetta 3 - Applications
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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2,240 |
by rmoretti Thu, 2018-06-28 12:58 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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1,492 |
by Danielsebas Thu, 2019-09-05 03:35 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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4,736 |
by rmoretti Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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3,634 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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2,683 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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1,402 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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4,328 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
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3,461 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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5,490 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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1,472 |
by brspurri Tue, 2020-08-18 09:57 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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4,690 |
by afmo Thu, 2014-05-22 01:19 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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2,709 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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2,273 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
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1,031 |
by nannemdp Wed, 2021-02-03 08:52 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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5,063 |
by lanselibai Sun, 2015-03-01 15:00 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
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4,009 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
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5,035 |
by jadolfbr Mon, 2014-04-21 06:48 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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2,957 |
by Denise Thu, 2017-06-15 04:26 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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4,086 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
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1,300 |
by haom Tue, 2020-06-16 05:55 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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3,809 |
by cossio Mon, 2015-01-19 07:10 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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1,424 |
by vmulligan Mon, 2020-03-02 13:40 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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3,638 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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1,086 |
by agctomer Sun, 2021-01-31 01:06 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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1,526 |
by maruhuang Thu, 2019-09-26 18:52 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
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3,363 |
by dgront Mon, 2014-04-21 06:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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4,205 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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2,433 |
by rmoretti Fri, 2019-03-29 09:30 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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496 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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4,609 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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1,881 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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1,833 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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559 |
by smlewis Wed, 2021-12-08 13:02 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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3,329 |
by mdyini Mon, 2014-04-21 06:47 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,148 |
by rmoretti Mon, 2014-04-21 06:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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3,400 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,183 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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2,784 |
by MJG Tue, 2017-04-04 23:59 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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4,590 |
by jljbbc Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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3,976 |
by rmoretti Wed, 2015-09-09 12:08 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,368 |
by jadolfbr Mon, 2014-04-21 06:47 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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4,500 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,124 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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1,231 |
by Corvin Wed, 2020-11-25 02:58 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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1,662 |
by danpf Fri, 2020-02-21 18:32 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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6,490 |
by weitzner Mon, 2014-04-21 06:47 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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2,696 |
by subha Fri, 2017-06-09 15:42 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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3,767 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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4,355 |
by wsgosal Mon, 2014-04-21 06:48 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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1,794 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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12,625 |
by smlewis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
3,954 |
by smlewis Mon, 2014-04-21 06:47 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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6,333 |
by lanselibai Fri, 2014-10-17 05:10 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
4,533 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
1,452 |
by marinok Mon, 2020-05-11 12:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,221 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
5,864 |
by IAndre Mon, 2014-04-21 06:47 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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2,293 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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920 |
by DGR95 Wed, 2021-04-28 16:13 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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4,173 |
by protos_heis Mon, 2014-04-21 06:47 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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4,775 |
by jadolfbr Tue, 2014-10-07 16:05 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
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2,044 |
by xingqing326 Tue, 2020-04-21 19:11 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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1,118 |
by ziruiw Fri, 2021-04-30 12:01 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
3,874 |
by rmoretti Tue, 2016-07-12 09:35 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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3,989 |
by attesor Tue, 2015-01-27 02:20 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
4 |
4,422 |
by rmoretti Mon, 2014-04-21 06:48 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,246 |
by fred Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
3,768 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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2,277 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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3,852 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,538 |
by fede Wed, 2020-09-23 11:24 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
3,524 |
by rmoretti Tue, 2015-03-31 08:20 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
2,320 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
895 |
by duz Mon, 2021-05-03 07:50 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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2,245 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
1,688 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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3,260 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
4,308 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
2,687 |
by jrporter Wed, 2017-07-05 06:30 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
5,057 |
by rmoretti Mon, 2014-04-21 06:47 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
3,588 |
by sacch Mon, 2014-04-21 06:47 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
3,529 |
by rmoretti Mon, 2017-02-20 08:09 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
5,920 |
by rmoretti Tue, 2015-03-31 08:56 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
1,684 |
by brspurri Wed, 2020-06-03 13:20 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
5 |
4,339 |
by lanselibai Wed, 2014-10-15 03:52 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
5 |
8,329 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
5 |
3,630 |
by rmoretti Thu, 2017-01-19 09:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
1,265 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
1,827 |
by everyday847 Wed, 2020-05-20 08:52 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
5,098 |
by Anonymous Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
5 |
3,900 |
by yperez Mon, 2014-04-21 06:47 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
5 |
1,837 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
3,668 |
by yzhou Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
5 |
4,212 |
by wangyr Mon, 2014-04-21 06:47 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
6,397 |
by attesor Wed, 2015-10-21 13:53 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
5 |
2,702 |
by rmoretti Thu, 2020-01-30 15:42 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
3,735 |
by Anonymous Mon, 2014-04-21 06:47 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
3,029 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
1,914 |
by smlewis Mon, 2019-09-23 11:42 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
4,621 |
by rmoretti Mon, 2014-04-21 06:47 |
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