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Rosetta 3 - Applications
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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1,671 |
by gezmi Tue, 2022-02-15 21:47 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
3,102 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
1,788 |
by rmoretti Tue, 2022-03-22 09:10 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,929 |
by ctqwong Mon, 2020-07-27 01:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,558 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,997 |
by nannemdp Sun, 2020-05-24 14:46 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,907 |
by rmoretti Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
2,433 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,742 |
by rmoretti Tue, 2016-07-12 09:41 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,603 |
by rmoretti Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,507 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
2,928 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,490 |
by rmoretti Mon, 2014-04-21 06:47 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
3 |
20,898 |
by rmoretti Fri, 2014-10-17 10:17 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,886 |
by smlewis Mon, 2017-01-23 06:26 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,852 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,805 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,098 |
by smlewis Thu, 2020-05-21 21:05 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,963 |
by nannemdp Mon, 2014-04-21 06:47 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
5,064 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
4,873 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,765 |
by vizcarra Thu, 2021-08-26 10:16 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
3,201 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
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4,483 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,887 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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3,229 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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2,292 |
by rmoretti Tue, 2020-07-28 08:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,837 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,709 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,756 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,968 |
by smlewis Mon, 2014-04-21 06:47 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
6,208 |
by rmoretti Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
4,449 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
4,326 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
2,434 |
by rmoretti Wed, 2019-09-18 10:21 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
4,063 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,756 |
by dswhit Tue, 2015-04-21 10:14 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
3 |
4,620 |
by Sajjad Wed, 2022-11-30 11:50 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,389 |
by rmoretti Thu, 2017-04-20 13:59 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,865 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
3,194 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
3,782 |
by smlewis Sat, 2017-12-23 15:56 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
4,224 |
by rmoretti Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,755 |
by rmoretti Fri, 2015-06-19 13:53 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,636 |
by rmoretti Tue, 2017-06-20 09:02 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,426 |
by smlewis Mon, 2014-04-21 06:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,558 |
by rmoretti Fri, 2018-11-23 11:23 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
3,529 |
by rmoretti Tue, 2017-10-10 09:58 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
2,081 |
by danpf Mon, 2019-09-16 09:51 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,765 |
by Anpu Tue, 2018-09-25 18:53 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,987 |
by smlewis Mon, 2014-04-21 06:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,617 |
by fukamitka Mon, 2014-04-21 06:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,409 |
by lanselibai Thu, 2014-10-23 03:26 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
4,023 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
1,981 |
by benhardy Fri, 2020-06-19 07:55 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
2,144 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,962 |
by danpf Thu, 2020-09-24 13:44 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,504 |
by rmoretti Tue, 2016-07-12 09:05 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
4,277 |
by gw Mon, 2014-04-21 06:47 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,777 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
2,124 |
by jkleman Tue, 2020-05-19 15:02 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,918 |
by nkemjika Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,743 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,404 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
2,255 |
by Danielsebas Thu, 2019-09-05 03:35 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,461 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
3,038 |
by rmoretti Thu, 2018-06-28 12:58 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,468 |
by cn Mon, 2014-04-21 06:47 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,798 |
by rmoretti Tue, 2015-11-10 11:35 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
4,957 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,740 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
3 |
555 |
by rmoretti Mon, 2023-05-08 13:14 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,674 |
by rmoretti Thu, 2015-04-16 10:38 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,896 |
by rmoretti Mon, 2014-05-12 08:45 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
4,027 |
by smlewis Mon, 2014-04-21 06:47 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,086 |
by rmoretti Thu, 2017-08-24 11:00 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
4,053 |
by smlewis Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,656 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
3,109 |
by rmoretti Wed, 2017-03-01 13:10 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,304 |
by smlewis Fri, 2014-03-07 13:02 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,795 |
by smlewis Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,581 |
by matteoferla Sat, 2021-06-19 03:07 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,660 |
by cossio Mon, 2015-01-19 07:10 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
2,235 |
by haom Tue, 2020-06-16 05:55 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
2,384 |
by maruhuang Thu, 2019-09-26 18:52 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
2,319 |
by vmulligan Mon, 2020-03-02 13:40 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
4 |
4,561 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
2,036 |
by agctomer Sun, 2021-01-31 01:06 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
1,780 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
4,950 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,633 |
by rmoretti Fri, 2019-03-29 09:30 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,579 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
4 |
2,883 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
4 |
2,794 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
2,586 |
by smlewis Wed, 2021-12-08 13:02 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
4,899 |
by rmoretti Mon, 2014-04-21 06:47 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
5,010 |
by protos_heis Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
3,755 |
by MJG Tue, 2017-04-04 23:59 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
4,160 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
4,785 |
by rmoretti Wed, 2015-09-09 12:08 |
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