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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
2,650 by renedominik
Tue, 2020-02-18 01:36
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
4,141 by smlewis
Mon, 2014-04-21 06:47
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
5,272 by rmoretti
Tue, 2017-06-20 09:02
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
3,358 by smlewis
Sat, 2017-12-23 15:56
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
3,581 by xun
Mon, 2014-04-21 06:47
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,974 by rmoretti
Mon, 2014-04-21 06:48
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
3,494 by rmoretti
Fri, 2015-06-19 13:53
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
3,149 by rmoretti
Tue, 2017-10-10 09:58
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
1,782 by danpf
Mon, 2019-09-16 09:51
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
4,515 by smlewis
Mon, 2014-04-21 06:47
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
3,488 by Anpu
Tue, 2018-09-25 18:53
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
3,184 by rmoretti
Fri, 2018-11-23 11:23
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
4,169 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,756 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,681 by benhardy
Fri, 2020-06-19 07:55
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
1,888 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
1,650 by danpf
Thu, 2020-09-24 13:44
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,512 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
3,118 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,616 by rmoretti
Mon, 2014-04-21 06:47
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,242 by rmoretti
Tue, 2016-07-12 09:05
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,525 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,836 by jkleman
Tue, 2020-05-19 15:02
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,199 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,725 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,968 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,540 by rmoretti
Tue, 2015-11-10 11:35
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
7,160 by rmoretti
Mon, 2014-04-21 06:47
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,485 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking one protein into interface between two other proteins
by Cheems » Sat, 2023-05-06 09:49
3
84 by rmoretti
Mon, 2023-05-08 13:14
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,413 by rmoretti
Thu, 2015-04-16 10:38
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,652 by rmoretti
Mon, 2014-05-12 08:45
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,340 by rmoretti
Mon, 2014-04-21 06:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,647 by nannemdp
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,399 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,819 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,814 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,581 by smlewis
Mon, 2014-04-21 06:47
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,255 by matteoferla
Sat, 2021-06-19 03:07
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
3,622 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,720 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
4,037 by smlewis
Fri, 2014-03-07 13:02
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,921 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
3,270 by brspurri
Fri, 2017-03-24 11:35
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
2,918 by ajasja
Wed, 2019-05-15 15:40
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
3,050 by jrcf
Fri, 2016-02-12 16:42
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
3,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
3,157 by rmoretti
Thu, 2018-06-28 12:44
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,873 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
2,417 by smlewis
Mon, 2018-10-15 08:42
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
4,095 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,429 by smlewis
Mon, 2016-05-02 08:20
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,356 by max
Thu, 2014-11-27 02:56
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
1,408 by agctomer
Thu, 2021-04-08 07:37
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,941 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,520 by rmoretti
Tue, 2018-02-06 09:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
4,372 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,246 by cn
Mon, 2014-04-21 06:47
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
4,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,496 by rmoretti
Wed, 2015-09-09 12:08
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
5,003 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
4,720 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,857 by Corvin
Wed, 2020-11-25 02:58
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,320 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,845 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
2,259 by danpf
Fri, 2020-02-21 18:32
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
3,223 by subha
Fri, 2017-06-09 15:42
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
2,521 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,733 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
13,830 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,504 by smlewis
Mon, 2014-04-21 06:47
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,933 by lanselibai
Fri, 2014-10-17 05:10
Normal topic EMERALD method not working, Rosetta version not available for download
by seba » Thu, 2023-05-04 08:14
4
179 by seba
Sun, 2023-05-07 02:39
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
5,139 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
2,092 by marinok
Mon, 2020-05-11 12:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,689 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,835 by Loki01
Thu, 2018-04-12 08:28
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
1,649 by DGR95
Wed, 2021-04-28 16:13
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,699 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
5,321 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
879 by erpannec
Thu, 2022-09-15 05:17
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
3,018 by xingqing326
Tue, 2020-04-21 19:11
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
4,529 by attesor
Tue, 2015-01-27 02:20
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
2,228 by ziruiw
Fri, 2021-04-30 12:01
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
4,559 by rmoretti
Tue, 2016-07-12 09:35
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
4,927 by rmoretti
Mon, 2014-04-21 06:48
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,783 by fred
Mon, 2014-04-21 06:47
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
4,368 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,873 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
5,065 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
4,901 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
5,063 by fede
Wed, 2020-09-23 11:24
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
4,037 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,171 by jljbbc
Mon, 2014-04-21 06:47
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
3,069 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
4
1,517 by duz
Mon, 2021-05-03 07:50
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
4,930 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,810 by subha
Fri, 2018-04-20 12:49
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
2,375 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,818 by dfcoelho
Tue, 2017-10-17 11:52
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