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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,240 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,492 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
4,736 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,634 by kxiao
Thu, 2014-06-05 08:37
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
2,683 by jhm13c
Thu, 2017-03-02 12:01
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
1,402 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
4,328 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
3,461 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
5,490 by rmoretti
Thu, 2015-04-16 11:23
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
1,472 by brspurri
Tue, 2020-08-18 09:57
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
4,690 by afmo
Thu, 2014-05-22 01:19
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
2,709 by smlewis
Wed, 2017-12-13 09:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,273 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
1,031 by nannemdp
Wed, 2021-02-03 08:52
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
5,063 by lanselibai
Sun, 2015-03-01 15:00
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
4,009 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
5,035 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
2,957 by Denise
Thu, 2017-06-15 04:26
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
4,086 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
1,300 by haom
Tue, 2020-06-16 05:55
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,809 by cossio
Mon, 2015-01-19 07:10
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
1,424 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
3,638 by lanselibai
Mon, 2014-11-03 13:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,086 by agctomer
Sun, 2021-01-31 01:06
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
1,526 by maruhuang
Thu, 2019-09-26 18:52
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,363 by dgront
Mon, 2014-04-21 06:47
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,205 by fred
Mon, 2014-04-21 06:48
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
2,433 by rmoretti
Fri, 2019-03-29 09:30
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
496 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
4,609 by rmoretti
Mon, 2014-02-24 09:12
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
1,881 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
1,833 by danpf
Fri, 2019-09-06 11:29
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
559 by smlewis
Wed, 2021-12-08 13:02
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,329 by mdyini
Mon, 2014-04-21 06:47
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
4,148 by rmoretti
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,400 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
4,183 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
2,784 by MJG
Tue, 2017-04-04 23:59
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
4,590 by jljbbc
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,976 by rmoretti
Wed, 2015-09-09 12:08
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
4,368 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
4,500 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
4,124 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,231 by Corvin
Wed, 2020-11-25 02:58
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
1,662 by danpf
Fri, 2020-02-21 18:32
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
6,490 by weitzner
Mon, 2014-04-21 06:47
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
2,696 by subha
Fri, 2017-06-09 15:42
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,355 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
1,794 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
12,625 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
3,954 by smlewis
Mon, 2014-04-21 06:47
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,333 by lanselibai
Fri, 2014-10-17 05:10
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,533 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
1,452 by marinok
Mon, 2020-05-11 12:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,221 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
5,864 by IAndre
Mon, 2014-04-21 06:47
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,293 by Loki01
Thu, 2018-04-12 08:28
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
920 by DGR95
Wed, 2021-04-28 16:13
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,173 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
4,775 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
2,044 by xingqing326
Tue, 2020-04-21 19:11
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
1,118 by ziruiw
Fri, 2021-04-30 12:01
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
3,874 by rmoretti
Tue, 2016-07-12 09:35
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
3,989 by attesor
Tue, 2015-01-27 02:20
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
4,422 by rmoretti
Mon, 2014-04-21 06:48
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,246 by fred
Mon, 2014-04-21 06:47
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,768 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,277 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
3,852 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
4,538 by fede
Wed, 2020-09-23 11:24
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
3,524 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
2,320 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
4
895 by duz
Mon, 2021-05-03 07:50
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,245 by subha
Fri, 2018-04-20 12:49
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
1,688 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,260 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
4,308 by rmoretti
Thu, 2015-04-30 16:46
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
2,687 by jrporter
Wed, 2017-07-05 06:30
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,057 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
3,588 by sacch
Mon, 2014-04-21 06:47
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
3,529 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,920 by rmoretti
Tue, 2015-03-31 08:56
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
1,684 by brspurri
Wed, 2020-06-03 13:20
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
4,339 by lanselibai
Wed, 2014-10-15 03:52
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
8,329 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
3,630 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,265 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
1,827 by everyday847
Wed, 2020-05-20 08:52
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
5,098 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
3,900 by yperez
Mon, 2014-04-21 06:47
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
1,837 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
3,668 by yzhou
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
4,212 by wangyr
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
6,397 by attesor
Wed, 2015-10-21 13:53
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
2,702 by rmoretti
Thu, 2020-01-30 15:42
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,735 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,029 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,914 by smlewis
Mon, 2019-09-23 11:42
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
4,621 by rmoretti
Mon, 2014-04-21 06:47
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