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Rosetta 3 - Applications
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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2,650 |
by renedominik Tue, 2020-02-18 01:36 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
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4,141 |
by smlewis Mon, 2014-04-21 06:47 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,272 |
by rmoretti Tue, 2017-06-20 09:02 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
3,358 |
by smlewis Sat, 2017-12-23 15:56 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,581 |
by xun Mon, 2014-04-21 06:47 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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3,974 |
by rmoretti Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
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3,494 |
by rmoretti Fri, 2015-06-19 13:53 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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3,149 |
by rmoretti Tue, 2017-10-10 09:58 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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1,782 |
by danpf Mon, 2019-09-16 09:51 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,515 |
by smlewis Mon, 2014-04-21 06:47 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,488 |
by Anpu Tue, 2018-09-25 18:53 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,184 |
by rmoretti Fri, 2018-11-23 11:23 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,169 |
by lanselibai Thu, 2014-10-23 03:26 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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3,756 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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1,681 |
by benhardy Fri, 2020-06-19 07:55 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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1,888 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,650 |
by danpf Thu, 2020-09-24 13:44 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
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3,512 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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3,118 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
6,616 |
by rmoretti Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,242 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,525 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
1,836 |
by jkleman Tue, 2020-05-19 15:02 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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3,199 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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2,725 |
by rmoretti Thu, 2018-06-28 12:58 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,968 |
by Danielsebas Thu, 2019-09-05 03:35 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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3,540 |
by rmoretti Tue, 2015-11-10 11:35 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,160 |
by rmoretti Mon, 2014-04-21 06:47 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,485 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
3 |
84 |
by rmoretti Mon, 2023-05-08 13:14 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,413 |
by rmoretti Thu, 2015-04-16 10:38 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,652 |
by rmoretti Mon, 2014-05-12 08:45 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,340 |
by rmoretti Mon, 2014-04-21 06:47 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,647 |
by nannemdp Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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3,399 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
2,819 |
by rmoretti Wed, 2017-03-01 13:10 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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2,814 |
by rmoretti Thu, 2017-08-24 11:00 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,581 |
by smlewis Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,255 |
by matteoferla Sat, 2021-06-19 03:07 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,622 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,720 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,037 |
by smlewis Fri, 2014-03-07 13:02 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
3,921 |
by matteoferla Tue, 2018-10-30 02:54 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,270 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
2,918 |
by ajasja Wed, 2019-05-15 15:40 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,050 |
by jrcf Fri, 2016-02-12 16:42 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,209 |
by smlewis Mon, 2014-04-21 06:47 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
3,157 |
by rmoretti Thu, 2018-06-28 12:44 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,873 |
by rmoretti Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,417 |
by smlewis Mon, 2018-10-15 08:42 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
4,095 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,429 |
by smlewis Mon, 2016-05-02 08:20 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,356 |
by max Thu, 2014-11-27 02:56 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,408 |
by agctomer Thu, 2021-04-08 07:37 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
3,941 |
by jadolfbr Mon, 2014-04-21 06:48 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,520 |
by rmoretti Tue, 2018-02-06 09:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,372 |
by fukamitka Mon, 2014-04-21 06:47 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,246 |
by cn Mon, 2014-04-21 06:47 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,718 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
4,496 |
by rmoretti Wed, 2015-09-09 12:08 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
5,003 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
4 |
4,720 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
1,857 |
by Corvin Wed, 2020-11-25 02:58 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,320 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,845 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,259 |
by danpf Fri, 2020-02-21 18:32 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,223 |
by subha Fri, 2017-06-09 15:42 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
2,521 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
5,733 |
by rmoretti Mon, 2014-04-21 06:47 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
13,830 |
by smlewis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
4,504 |
by smlewis Mon, 2014-04-21 06:47 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
4 |
6,933 |
by lanselibai Fri, 2014-10-17 05:10 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
4 |
179 |
by seba Sun, 2023-05-07 02:39 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,139 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
2,092 |
by marinok Mon, 2020-05-11 12:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,689 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
2,835 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
1,649 |
by DGR95 Wed, 2021-04-28 16:13 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
4,699 |
by protos_heis Mon, 2014-04-21 06:47 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,321 |
by jadolfbr Tue, 2014-10-07 16:05 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
879 |
by erpannec Thu, 2022-09-15 05:17 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
3,018 |
by xingqing326 Tue, 2020-04-21 19:11 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
4,529 |
by attesor Tue, 2015-01-27 02:20 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
2,228 |
by ziruiw Fri, 2021-04-30 12:01 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,559 |
by rmoretti Tue, 2016-07-12 09:35 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
4 |
4,927 |
by rmoretti Mon, 2014-04-21 06:48 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,783 |
by fred Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
4,368 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,873 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
5,065 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
4,901 |
by rmoretti Mon, 2014-04-21 06:47 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
5,063 |
by fede Wed, 2020-09-23 11:24 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
4,037 |
by rmoretti Tue, 2015-03-31 08:20 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,171 |
by jljbbc Mon, 2014-04-21 06:47 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,069 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
1,517 |
by duz Mon, 2021-05-03 07:50 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
4,930 |
by jadolfbr Mon, 2014-04-21 06:47 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,810 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,375 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
3,818 |
by dfcoelho Tue, 2017-10-17 11:52 |
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