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Rosetta 3 - Applications
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Views | Last post | |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
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2,999 |
by smlewis Mon, 2014-04-21 06:47 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,308 |
by ast Mon, 2014-04-21 06:48 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,231 |
by rmoretti Tue, 2017-04-25 06:41 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
1,892 |
by happycaapi Tue, 2021-06-29 15:35 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
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2,006 |
by smlewis Fri, 2018-09-14 10:34 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,187 |
by fukamitka Mon, 2014-04-21 06:47 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
4,370 |
by rmoretti Tue, 2014-06-17 08:51 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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4,517 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
4,247 |
by smlewis Fri, 2014-03-07 14:09 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,473 |
by nkemjika Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,539 |
by beowulfey Tue, 2015-06-23 16:10 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
3 |
1,196 |
by zdaw Tue, 2020-12-15 15:38 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
3,800 |
by gw Mon, 2014-04-21 06:47 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,467 |
by rmoretti Wed, 2018-03-07 08:44 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,050 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,006 |
by smlewis Wed, 2018-12-12 16:51 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,065 |
by cn Mon, 2014-04-21 06:47 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,620 |
by YuFei Sat, 2020-05-30 00:12 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,211 |
by rmoretti Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,392 |
by rmoretti Mon, 2014-05-12 15:16 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,601 |
by rmoretti Fri, 2016-06-17 10:36 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,128 |
by weehee Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,586 |
by rmoretti Wed, 2015-09-02 12:33 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,605 |
by rmoretti Thu, 2017-02-02 09:02 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,063 |
by bjharris Sun, 2020-08-23 14:03 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
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809 |
by gezmi Tue, 2022-02-15 21:47 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
4,480 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,517 |
by rmoretti Tue, 2016-07-12 09:30 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,629 |
by smlewis Wed, 2017-02-15 07:43 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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722 |
by rmoretti Tue, 2022-03-22 09:10 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
2,963 |
by brspurri Sat, 2017-08-26 07:08 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
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1,502 |
by nannemdp Sun, 2020-05-24 14:46 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,552 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,462 |
by ctqwong Mon, 2020-07-27 01:48 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
1,599 |
by He Xiao Sun, 2021-04-11 19:29 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,234 |
by rmoretti Tue, 2016-07-12 09:41 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
2,606 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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1,343 |
by DGR95 Wed, 2021-04-28 16:13 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
13,238 |
by smlewis Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
1,774 |
by marinok Mon, 2020-05-11 12:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,509 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,101 |
by jadolfbr Tue, 2014-10-07 16:05 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
424 |
by erpannec Thu, 2022-09-15 05:17 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
2,537 |
by xingqing326 Tue, 2020-04-21 19:11 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
4,304 |
by attesor Tue, 2015-01-27 02:20 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
1,737 |
by ziruiw Fri, 2021-04-30 12:01 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,224 |
by rmoretti Tue, 2016-07-12 09:35 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
4,122 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,646 |
by ladimafakher Thu, 2018-11-01 03:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
4 |
4,714 |
by rmoretti Mon, 2014-04-21 06:48 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
4,474 |
by protos_heis Mon, 2014-04-21 06:47 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
4,486 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
2,766 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
1,283 |
by duz Mon, 2021-05-03 07:50 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
4,837 |
by fede Wed, 2020-09-23 11:24 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
3,807 |
by rmoretti Tue, 2015-03-31 08:20 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
4,540 |
by rmoretti Mon, 2014-04-21 06:47 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,564 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,052 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
3,564 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
4,929 |
by jljbbc Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,534 |
by fred Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
4,657 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,006 |
by jrporter Wed, 2017-07-05 06:30 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
4,703 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
3,851 |
by rmoretti Mon, 2017-02-20 08:09 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
6,860 |
by weitzner Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
3,977 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
2,981 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
1,737 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
3,745 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
5,891 |
by rmoretti Thu, 2015-04-16 11:23 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
1,844 |
by brspurri Tue, 2020-08-18 09:57 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
4,634 |
by yogeshkd Mon, 2014-04-21 06:47 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
4,986 |
by afmo Thu, 2014-05-22 01:19 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
373 |
by almeida85 Thu, 2022-08-11 00:58 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
3,080 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
2,657 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,363 |
by nannemdp Wed, 2021-02-03 08:52 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
3,858 |
by sacch Mon, 2014-04-21 06:47 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
5,433 |
by lanselibai Sun, 2015-03-01 15:00 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
4,995 |
by rmoretti Mon, 2014-04-21 06:47 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
4,285 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
5,368 |
by jadolfbr Mon, 2014-04-21 06:48 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
3,312 |
by Denise Thu, 2017-06-15 04:26 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,097 |
by cossio Mon, 2015-01-19 07:10 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
1,621 |
by haom Tue, 2020-06-16 05:55 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
6,217 |
by IAndre Mon, 2014-04-21 06:47 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
1,744 |
by vmulligan Mon, 2020-03-02 13:40 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
4 |
3,955 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
1,419 |
by agctomer Sun, 2021-01-31 01:06 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
1,834 |
by maruhuang Thu, 2019-09-26 18:52 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
986 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
4,488 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
2,877 |
by rmoretti Fri, 2019-03-29 09:30 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
4,435 |
by smlewis Mon, 2014-04-21 06:47 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
4 |
2,173 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
1,116 |
by smlewis Wed, 2021-12-08 13:02 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
4,951 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
4 |
2,253 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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