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Rosetta 3 - Applications
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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3,454 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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4,010 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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1,307 |
by danpf Fri, 2020-02-21 18:32 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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1,303 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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4,709 |
by rmoretti Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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3,610 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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4,069 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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5,967 |
by lanselibai Fri, 2014-10-17 05:10 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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11,912 |
by smlewis Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
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1,130 |
by marinok Mon, 2020-05-11 12:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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3,943 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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1,944 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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478 |
by DGR95 Wed, 2021-04-28 16:13 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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4,421 |
by jadolfbr Tue, 2014-10-07 16:05 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
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1,503 |
by xingqing326 Tue, 2020-04-21 19:11 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
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3,473 |
by rmoretti Tue, 2016-07-12 09:35 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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3,682 |
by attesor Tue, 2015-01-27 02:20 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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501 |
by ziruiw Fri, 2021-04-30 12:01 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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3,831 |
by protos_heis Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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3,452 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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1,885 |
by ladimafakher Thu, 2018-11-01 03:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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4,053 |
by rmoretti Mon, 2014-04-21 06:48 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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3,186 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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3,247 |
by rmoretti Tue, 2015-03-31 08:20 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
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1,845 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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499 |
by duz Mon, 2021-05-03 07:50 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,154 |
by fede Wed, 2020-09-23 11:24 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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3,810 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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2,923 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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4,284 |
by jljbbc Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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2,943 |
by fred Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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3,896 |
by rmoretti Thu, 2015-04-30 16:46 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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2,320 |
by jrporter Wed, 2017-07-05 06:30 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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1,931 |
by subha Fri, 2018-04-20 12:49 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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1,286 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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3,159 |
by rmoretti Mon, 2017-02-20 08:09 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,040 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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6,098 |
by weitzner Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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3,351 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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2,374 |
by jhm13c Thu, 2017-03-02 12:01 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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1,021 |
by Martin Floor Tue, 2020-09-22 00:48 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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3,258 |
by rmoretti Thu, 2017-01-19 09:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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832 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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1,392 |
by everyday847 Wed, 2020-05-20 08:52 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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1,459 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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5,994 |
by attesor Wed, 2015-10-21 13:53 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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1,968 |
by rmoretti Thu, 2020-01-30 15:42 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
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5,284 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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2,607 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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1,532 |
by smlewis Mon, 2019-09-23 11:42 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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5,303 |
by rmoretti Mon, 2014-04-21 10:47 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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1,467 |
by vmulligan Fri, 2020-04-10 02:54 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
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4,754 |
by Anonymous Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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2,770 |
by smlewis Fri, 2017-01-20 08:14 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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1,309 |
by jadolfbr Fri, 2020-07-24 07:24 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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3,564 |
by yperez Mon, 2014-04-21 06:47 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
5,056 |
by brspurri Mon, 2014-04-21 06:47 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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3,315 |
by rmoretti Thu, 2017-06-01 08:52 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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3,293 |
by yzhou Mon, 2014-04-21 06:47 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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3,097 |
by rmoretti Mon, 2018-11-12 14:31 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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3,821 |
by wangyr Mon, 2014-04-21 06:47 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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3,526 |
by sjyang7 Sat, 2017-06-03 06:09 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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2,603 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
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3,379 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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4,489 |
by rmoretti Fri, 2015-04-24 12:02 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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4,148 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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3,037 |
by David Weis Mon, 2017-03-13 10:59 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
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4,299 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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4,169 |
by michael_luntan Mon, 2014-04-21 06:47 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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3,383 |
by felipet Fri, 2017-06-16 11:42 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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1,277 |
by jadolfbr Wed, 2020-05-06 11:37 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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2,340 |
by Yero Thu, 2019-07-18 01:39 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
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7,079 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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5,088 |
by rmoretti Mon, 2015-10-12 15:10 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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3,380 |
by rmoretti Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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4,676 |
by smlewis Mon, 2014-04-21 06:47 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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3,462 |
by rmoretti Thu, 2017-08-24 08:19 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
2,426 |
by dfcoelho Tue, 2018-10-16 09:05 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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4,249 |
by mkoohim Mon, 2014-04-21 06:47 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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2,789 |
by attesor Thu, 2017-03-16 01:21 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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1,448 |
by danpf Tue, 2020-05-12 10:58 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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1,157 |
by Astghik Thu, 2020-10-15 00:48 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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3,611 |
by rmoretti Mon, 2015-02-09 12:04 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
5 |
2,348 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
5 |
4,458 |
by brianmlee Mon, 2014-11-24 19:40 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
3,310 |
by aroop Mon, 2014-04-21 06:47 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
5 |
2,609 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
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4,800 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
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5,479 |
by m_grisewood Mon, 2014-04-21 06:47 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
2,522 |
by smlewis Tue, 2017-07-11 07:53 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
5 |
504 |
by nc-ring Tue, 2021-05-04 12:26 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
5,700 |
by linucks Mon, 2016-06-20 12:02 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
1,951 |
by rmoretti Tue, 2019-07-09 10:13 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
5 |
3,676 |
by ks Mon, 2016-09-12 03:14 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
5,508 |
by rmoretti Tue, 2015-11-24 15:30 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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3,966 |
by smlewis Mon, 2014-04-21 06:47 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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4,585 |
by siciliu Thu, 2014-04-10 09:50 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
5,100 |
by Anonymous Mon, 2014-04-21 06:47 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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1,663 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
4,316 |
by smlewis Mon, 2014-04-21 06:47 |
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