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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
1,671 by gezmi
Tue, 2022-02-15 21:47
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
3,102 by smlewis
Wed, 2017-02-15 07:43
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
1,788 by rmoretti
Tue, 2022-03-22 09:10
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,929 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
3,558 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,997 by nannemdp
Sun, 2020-05-24 14:46
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
6,907 by rmoretti
Mon, 2014-04-21 06:47
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
2,433 by He Xiao
Sun, 2021-04-11 19:29
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
3,742 by rmoretti
Tue, 2016-07-12 09:41
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,603 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
3,507 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
2,928 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
7,490 by rmoretti
Mon, 2014-04-21 06:47
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
20,898 by rmoretti
Fri, 2014-10-17 10:17
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,886 by smlewis
Mon, 2017-01-23 06:26
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
4,852 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,805 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
2,098 by smlewis
Thu, 2020-05-21 21:05
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,963 by nannemdp
Mon, 2014-04-21 06:47
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
5,064 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
4,873 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
1,765 by vizcarra
Thu, 2021-08-26 10:16
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
3,201 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
4,483 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
7,887 by fred
Thu, 2014-03-27 11:29
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
3,229 by sn
Mon, 2017-03-06 10:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
2,292 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,837 by rmoretti
Mon, 2018-11-12 14:35
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
1,709 by everyday847
Wed, 2020-12-09 21:46
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
3,756 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,968 by smlewis
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
6,208 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
3
4,449 by Patrícia Antunes
Fri, 2023-01-20 11:55
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
4,326 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
2,434 by rmoretti
Wed, 2019-09-18 10:21
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
4,063 by protos_heis
Tue, 2014-08-05 12:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
3,756 by dswhit
Tue, 2015-04-21 10:14
Normal topic Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol
by Sajjad » Mon, 2022-11-28 14:09
3
4,620 by Sajjad
Wed, 2022-11-30 11:50
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
3,389 by rmoretti
Thu, 2017-04-20 13:59
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
3,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
3,194 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
3,782 by smlewis
Sat, 2017-12-23 15:56
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
4,224 by rmoretti
Mon, 2014-04-21 06:48
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
3,755 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
5,636 by rmoretti
Tue, 2017-06-20 09:02
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
3,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
3,558 by rmoretti
Fri, 2018-11-23 11:23
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
3,529 by rmoretti
Tue, 2017-10-10 09:58
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
2,081 by danpf
Mon, 2019-09-16 09:51
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
3,765 by Anpu
Tue, 2018-09-25 18:53
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
4,987 by smlewis
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
4,617 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
4,409 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
4,023 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,981 by benhardy
Fri, 2020-06-19 07:55
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
2,144 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
1,962 by danpf
Thu, 2020-09-24 13:44
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,504 by rmoretti
Tue, 2016-07-12 09:05
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
4,277 by gw
Mon, 2014-04-21 06:47
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,777 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
2,124 by jkleman
Tue, 2020-05-19 15:02
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,918 by nkemjika
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,743 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
3,404 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
2,255 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,461 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
3,038 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,468 by cn
Mon, 2014-04-21 06:47
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,798 by rmoretti
Tue, 2015-11-10 11:35
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
4,957 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,740 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking one protein into interface between two other proteins
by Cheems » Sat, 2023-05-06 09:49
3
555 by rmoretti
Mon, 2023-05-08 13:14
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,674 by rmoretti
Thu, 2015-04-16 10:38
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,896 by rmoretti
Mon, 2014-05-12 08:45
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
4,027 by smlewis
Mon, 2014-04-21 06:47
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
3,086 by rmoretti
Thu, 2017-08-24 11:00
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
4,053 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,656 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
3,109 by rmoretti
Wed, 2017-03-01 13:10
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
4,304 by smlewis
Fri, 2014-03-07 13:02
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,795 by smlewis
Mon, 2014-04-21 06:47
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,581 by matteoferla
Sat, 2021-06-19 03:07
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
4,660 by cossio
Mon, 2015-01-19 07:10
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
2,235 by haom
Tue, 2020-06-16 05:55
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
2,384 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
2,319 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
4,561 by lanselibai
Mon, 2014-11-03 13:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
2,036 by agctomer
Sun, 2021-01-31 01:06
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
1,780 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,950 by fred
Mon, 2014-04-21 06:48
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
3,633 by rmoretti
Fri, 2019-03-29 09:30
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
5,579 by rmoretti
Mon, 2014-02-24 09:12
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
2,883 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
2,794 by danpf
Fri, 2019-09-06 11:29
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
2,586 by smlewis
Wed, 2021-12-08 13:02
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
4,899 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
5,010 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
3,755 by MJG
Tue, 2017-04-04 23:59
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
4,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,785 by rmoretti
Wed, 2015-09-09 12:08
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