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Rosetta 3 - Applications

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Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,959 by max
Thu, 2014-11-27 02:56
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
2,097 by agctomer
Thu, 2021-04-08 07:37
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
4,413 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
3,074 by rmoretti
Tue, 2018-02-06 09:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
6,331 by nannemdp
Mon, 2014-04-21 06:47
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
4,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
4,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,796 by smlewis
Fri, 2018-09-14 10:34
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
3,939 by ast
Mon, 2014-04-21 06:48
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
2,992 by rmoretti
Tue, 2017-04-25 06:41
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
2,759 by happycaapi
Tue, 2021-06-29 15:35
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
5,691 by rmoretti
Tue, 2014-06-17 08:51
Normal topic Are catalytic residues mutatable?
by uka147 » Thu, 2023-10-26 03:49
3
734 by uka147
Mon, 2023-10-30 01:53
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
3,663 by smlewis
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
5,071 by smlewis
Fri, 2014-03-07 14:09
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
4,379 by beowulfey
Tue, 2015-06-23 16:10
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,930 by zdaw
Tue, 2020-12-15 15:38
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
3,008 by smlewis
Wed, 2018-12-12 16:51
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
2,350 by YuFei
Sat, 2020-05-30 00:12
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
3,420 by rmoretti
Wed, 2018-03-07 08:44
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
3,632 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
3,845 by weehee
Mon, 2014-04-21 06:47
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
4,305 by rmoretti
Wed, 2015-09-02 12:33
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
3,318 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
4,402 by bjharris
Sun, 2020-08-23 14:03
Normal topic DockingProtocol
by Soler » Fri, 2022-02-11 00:12
3
2,140 by gezmi
Tue, 2022-02-15 21:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
4,289 by rmoretti
Tue, 2016-07-12 09:30
Normal topic The confussion about an example in tutorial in Rosetta Virtual Workshop 2020
by ldx022 » Tue, 2022-11-29 04:58
3
4,509 by ldx022
Tue, 2022-11-29 08:38
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,854 by rmoretti
Mon, 2014-04-21 06:47
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
4,057 by rmoretti
Mon, 2014-05-12 15:16
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
4,450 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Deciding -nstruct for RNA FARFAR2
by mandar » Thu, 2024-03-07 22:16
3
418 by mandar
Thu, 2024-03-14 22:25
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
3,364 by smlewis
Wed, 2017-02-15 07:43
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
2,179 by rmoretti
Tue, 2022-03-22 09:10
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
5,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
4,921 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,727 by cn
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
4,549 by gw
Mon, 2014-04-21 06:47
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
2,188 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
4,160 by nkemjika
Mon, 2014-04-21 06:47
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
3,913 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
2,286 by nannemdp
Sun, 2020-05-24 14:46
Normal topic PDB file showing error - missing heavyatom: OXT on residue LYS:CtermProteinFull 59
by intomybioverse » Wed, 2024-05-15 23:38
3
159 by rmoretti
Mon, 2024-05-20 07:22
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
4,027 by rmoretti
Tue, 2016-07-12 09:41
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
2,895 by He Xiao
Sun, 2021-04-11 19:29
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
21,169 by rmoretti
Fri, 2014-10-17 10:17
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
5,250 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
3,744 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
3,365 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
3,154 by smlewis
Mon, 2017-01-23 06:26
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
5,338 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
5,260 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
2,093 by vizcarra
Thu, 2021-08-26 10:16
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
4,328 by smlewis
Mon, 2014-04-21 06:47
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
3,443 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
5,116 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
3,100 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
2,442 by smlewis
Thu, 2020-05-21 21:05
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
3,990 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
4,803 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
8,203 by fred
Thu, 2014-03-27 11:29
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
3,550 by sn
Mon, 2017-03-06 10:03
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
2,651 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
3,133 by rmoretti
Mon, 2018-11-12 14:35
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
2,003 by everyday847
Wed, 2020-12-09 21:46
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
4,337 by protos_heis
Tue, 2014-08-05 12:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
4,019 by dswhit
Tue, 2015-04-21 10:14
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
6,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
3
4,894 by Patrícia Antunes
Fri, 2023-01-20 11:55
Normal topic Error about rifdocking step 12
by ng98 » Mon, 2024-01-08 16:27
3
588 by ng98
Tue, 2024-01-09 23:42
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
4,303 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
4,683 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
2,743 by rmoretti
Wed, 2019-09-18 10:21
Normal topic Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol
by Sajjad » Mon, 2022-11-28 14:09
3
5,126 by Sajjad
Wed, 2022-11-30 11:50
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
3,688 by rmoretti
Thu, 2017-04-20 13:59
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
3,466 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
6,021 by rmoretti
Tue, 2017-06-20 09:02
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
4,191 by smlewis
Sat, 2017-12-23 15:56
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
4,466 by rmoretti
Mon, 2014-04-21 06:48
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
4,071 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
4,276 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
3,982 by glemmon
Mon, 2014-04-21 06:47
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
4,066 by Anpu
Tue, 2018-09-25 18:53
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
4,029 by rmoretti
Fri, 2018-11-23 11:23
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
3,916 by rmoretti
Tue, 2017-10-10 09:58
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
2,384 by danpf
Mon, 2019-09-16 09:51
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
4,682 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
4,299 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
2,267 by benhardy
Fri, 2020-06-19 07:55
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
2,421 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
2,265 by danpf
Thu, 2020-09-24 13:44
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,792 by rmoretti
Tue, 2016-07-12 09:05
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
3,036 by smlewis
Mon, 2018-09-10 11:48
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
2,424 by jkleman
Tue, 2020-05-19 15:02
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
4,010 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
3,760 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,722 by dee2711453
Fri, 2016-03-11 21:32
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
3,328 by rmoretti
Thu, 2018-06-28 12:58
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
6,047 by weitzner
Mon, 2014-04-21 06:47
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
2,532 by Danielsebas
Thu, 2019-09-05 03:35
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