Hi Rosetta team,
I'm trying to use step wise Monte Carlo to model RNA structure.
Here is the command I used:
stepwise.static.linuxgccrelease -fasta 2gdix.fasta -s H0_minimize.pdb H1_minimize.pdb H2_minimize.pdb H3_minimize.pdb H4_minimize.pdb H5_minimize.pdb -input_res 1-5 76-80 6-9 39-42 12-14 27-29 16-18 24-26 48-50 71-73 54-57 64-67 -nstruct 10000 -cycles 10000 -out:file:silent swm_2gdi_nores.out -motif_mode -minimize_rna -allow_complex_loop_graph true -in:file:native 2gdix_RNA.pdb -cst_file fade_0_50_cd10.cst -score:weights stepwise/rna/rna_res_level_energy4.wts -restore_talaris_behavior
I get a strange error and the job just seems to fall into an infinite look without producing an output file:
[FILE]: src/core/pose/full_model_info/FullModelInfo.cc [LINE]: 372 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `idx == 0` failed.
I wonder if it's something with the script? I attached part of my crash file as well. Thank you.