You are here

Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
3,865 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
3,930 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
1,565 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
6,911 by rosa
Mon, 2014-04-21 06:48
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
1,190 by matteoferla
Mon, 2021-08-09 01:53
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
2,457 by wlzhang
Sun, 2014-04-20 18:17
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
3,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
6,123 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
4,407 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
1,169 by taylorjones
Wed, 2021-06-09 16:30
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
5,183 by smlewis
Tue, 2016-08-30 13:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
2,361 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,895 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
936 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
2,872 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
3,855 by smlewis
Mon, 2014-04-21 06:47
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
2,060 by smlewis
Mon, 2014-04-21 06:47
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
7,717 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
3,106 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
2,052 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
3,004 by reddybg
Mon, 2014-04-21 06:47
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
3,071 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
3,349 by jrcf
Tue, 2016-05-03 17:40
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
0
1,103 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,849 by rmoretti
Mon, 2018-02-05 15:44
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
3,986 by rmoretti
Wed, 2015-12-16 11:22
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
6,280 by obdulia
Wed, 2016-07-13 09:11
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
6,212 by fukamitka
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
4,749 by phanvy
Thu, 2014-10-16 18:54
Normal topic Calculating SAP score using RosettaScripts
by varunmc99 » Fri, 2023-05-12 11:03
2
1,014 by varunmc99
Fri, 2023-05-12 11:49
Normal topic Calculating shape complementarity of ligand and protein
by varunmc99 » Tue, 2023-01-17 11:29
1
784 by rmoretti
Mon, 2023-02-06 14:42
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
2,470 by benhardy
Fri, 2021-05-07 07:22
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,938 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
4,417 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
6,162 by cossio
Thu, 2015-01-29 11:50
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
9,543 by wangyr
Mon, 2014-04-21 06:47
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
3,475 by nannemdp
Fri, 2021-02-05 06:49
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
5,592 by byin
Mon, 2014-04-21 06:47
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
3,559 by aaxx
Wed, 2019-11-06 01:44
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,652 by Loki01
Wed, 2017-12-13 05:27
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
3,078 by doranhen
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
2,780 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
2,302 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,678 by rmoretti
Tue, 2014-02-11 06:24
Normal topic can't access rosetta commercial license download via given URL from CoMotion
by y_atsmonraz » Tue, 2023-02-14 11:04
8
2,074 by rmoretti
Thu, 2023-02-16 13:48
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,901 by barak
Mon, 2014-04-21 06:47
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10
26
25,409 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,953 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Canceling jobs - RosettaDock5.0
by katie » Tue, 2024-04-09 12:30
0
142 by katie
Tue, 2024-04-09 12:30
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,853 by road runner
Tue, 2015-12-01 10:08
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
1,744 by csvajda
Mon, 2022-03-07 07:46
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
7,489 by ac.research
Fri, 2017-08-18 00:57
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
4,098 by smlewis
Tue, 2018-06-12 10:54
Normal topic Cartesian_ddG mutfile error
by paulbo » Mon, 2024-02-05 01:25
0
432 by paulbo
Mon, 2024-02-05 01:25
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
3,564 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,643 by vasek
Mon, 2014-04-21 06:48
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
1,475 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
3,189 by rmoretti
Fri, 2020-11-06 08:04
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
3,861 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
11,603 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
10,805 by rmoretti
Mon, 2015-02-09 09:09
Normal topic Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help)
by seamoon » Wed, 2023-05-24 07:46
0
411 by seamoon
Wed, 2023-05-24 07:46
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,598 by rmoretti
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
4,966 by aneamtu
Thu, 2018-01-18 00:56
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
3,156 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,783 by MarkW
Fri, 2015-07-03 15:36
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
5,254 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
2,496 by rmoretti
Sat, 2019-03-30 12:12
Normal topic clean_pdb.py
by duz » Wed, 2021-03-24 13:36
2
2,446 by duz
Thu, 2021-04-01 09:34
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
1
885 by rmoretti
Mon, 2022-09-12 06:58
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
3,012 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,252 by nawsad
Fri, 2014-06-20 02:48
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
4,597 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
4,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
3,003 by justin
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
4,029 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,612 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
3,116 by attesor
Fri, 2014-10-31 04:23
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
7,264 by ritacc18
Mon, 2014-04-21 06:47
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
1,495 by albumns
Mon, 2014-04-21 06:47
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
5,121 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
3,504 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
955 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
1,562 by brownbp1
Tue, 2021-02-09 12:12
Normal topic clustering PDBs from docking
by jbujons » Wed, 2024-04-24 08:34
2
214 by jbujons
Wed, 2024-04-24 09:34
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
1,593 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
1,282 by rmoretti
Tue, 2021-04-20 13:06
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
5,789 by jwillis
Sat, 2015-06-27 21:11
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
1,585 by justin
Mon, 2014-04-21 06:47
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
8,816 by rmoretti
Wed, 2014-09-24 09:57
Hot topic Collecting 3.2 documentation holes
by smlewis » Wed, 2011-01-26 10:39
23
19,739 by FrankVerdin86
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
3,371 by smlewis
Tue, 2014-12-23 13:58
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
3,637 by smlewis
Fri, 2016-07-22 07:31
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
4,485 by freedman
Mon, 2017-03-06 13:24
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
6,489 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
4,965 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
3,536 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,823 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
949 by Sunidhi
Sun, 2020-11-01 11:01
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General