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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,105 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
1 |
1,102 |
by brownbp1 Tue, 2021-02-09 12:12 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
1,100 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
1 |
1,099 |
by rmoretti Tue, 2021-02-09 12:02 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
1 |
1,098 |
by rmoretti Tue, 2021-02-09 12:35 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
1 |
1,096 |
by matteoferla Tue, 2020-04-14 03:36 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,096 |
by diasmarieli Fri, 2021-11-26 05:11 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
1,095 |
by matteoferla Wed, 2020-01-01 04:30 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
1 |
1,093 |
by rmoretti Tue, 2020-10-13 11:40 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
1 |
1,090 |
by matteoferla Mon, 2021-03-22 08:29 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
1 |
1,089 |
by vmulligan Wed, 2021-04-28 14:20 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,089 |
by matteoferla Thu, 2021-06-03 08:24 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
1 |
1,086 |
by dgront Thu, 2021-02-11 08:30 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
5 |
1,085 |
by matteoferla Fri, 2022-07-01 13:49 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
1,083 |
by vmulligan Mon, 2020-06-29 13:09 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
1,081 |
by hajar Wed, 2020-06-10 11:17 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
2 |
1,076 |
by almeida85 Mon, 2021-02-08 09:50 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
1 |
1,074 |
by sheehajh Fri, 2020-02-21 12:41 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
1 |
1,070 |
by amelie.stein Mon, 2020-09-28 10:41 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
1 |
1,066 |
by rmoretti Tue, 2021-02-09 12:25 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
1 |
1,060 |
by rmoretti Tue, 2021-02-09 11:30 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
1,057 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,054 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
1 |
1,024 |
by rmoretti Fri, 2021-05-28 08:54 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
1 |
1,017 |
by aloshbau Tue, 2021-03-09 02:47 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
1,016 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
2 |
1,014 |
by patcD Wed, 2021-09-01 06:54 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
1,013 |
by protein_fan Fri, 2022-04-15 17:41 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
1 |
992 |
by rmoretti Tue, 2021-04-13 06:42 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
988 |
by windmill Thu, 2020-06-18 21:32 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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983 |
by ela Fri, 2018-08-31 02:53 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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982 |
by zhoubin Fri, 2019-01-04 13:14 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
1 |
975 |
by rmoretti Thu, 2022-04-07 07:51 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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972 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
3 |
967 |
by csvajda Mon, 2022-03-07 07:46 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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964 |
by rlwoltz Mon, 2019-03-11 18:32 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
1 |
960 |
by taylorjones Mon, 2021-04-05 13:17 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
0 |
958 |
by fgomes Fri, 2019-11-22 19:12 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
2 |
956 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
2 |
955 |
by hong wei Thu, 2021-11-25 02:46 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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951 |
by bio_james Wed, 2017-12-13 09:13 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
950 |
by matteoferla Thu, 2021-09-02 03:50 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
0 |
948 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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937 |
by rmoretti Tue, 2021-02-09 10:48 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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936 |
by matteoferla Fri, 2020-04-10 02:40 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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934 |
by rmoretti Wed, 2021-01-20 07:39 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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933 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
931 |
by bazzoli Wed, 2018-10-10 01:59 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
0 |
930 |
by ac.research Mon, 2018-05-14 08:27 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
2 |
922 |
by lanselibai Wed, 2021-06-23 13:21 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
2 |
922 |
by ericlang Mon, 2021-07-05 06:59 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
921 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
920 |
by obdulia Wed, 2018-04-18 00:45 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
1 |
920 |
by rmoretti Wed, 2021-06-23 02:17 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
0 |
919 |
by matteoferla Tue, 2020-07-14 01:51 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
2 |
918 |
by lanselibai Thu, 2021-06-24 10:16 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
910 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
1 |
908 |
by rmoretti Tue, 2021-04-20 13:06 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
906 |
by yangshen12 Fri, 2018-10-26 12:34 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
903 |
by BioPython Sun, 2019-05-12 20:07 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
901 |
by matteoferla Thu, 2021-04-01 04:06 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
1 |
885 |
by cryosky Fri, 2021-09-17 22:04 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
884 |
by matteoferla Mon, 2021-08-09 01:53 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
3 |
883 |
by ssrb Tue, 2022-07-05 11:07 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
1 |
871 |
by rmoretti Wed, 2021-07-14 07:07 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
867 |
by Anpu Thu, 2018-09-27 23:36 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
862 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
1 |
861 |
by zivben Sat, 2021-07-31 08:16 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
0 |
858 |
by pmit Thu, 2018-05-03 01:48 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
1 |
853 |
by asbelx Wed, 2021-09-08 23:19 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
1 |
849 |
by ahuls1 Thu, 2021-07-29 13:23 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
1 |
843 |
by rmoretti Tue, 2021-02-09 10:29 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
0 |
842 |
by jmaly Wed, 2020-09-02 16:16 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
0 |
834 |
by rohi Thu, 2020-10-15 10:28 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
0 |
830 |
by matteoferla Sun, 2020-03-22 05:29 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
0 |
822 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
0 |
820 |
by matteoferla Fri, 2021-02-26 07:12 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
0 |
817 |
by LTJ Mon, 2020-07-06 14:13 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
816 |
by Kazu Wed, 2020-05-20 11:58 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
0 |
808 |
by haom Wed, 2020-09-09 09:19 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
0 |
791 |
by rlwoltz Tue, 2021-08-03 23:26 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
1 |
790 |
by taylorjones Wed, 2021-06-09 16:30 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
0 |
790 |
by Danielsebas Tue, 2019-09-24 05:03 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
789 |
by yinasun Fri, 2019-07-26 02:17 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
771 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
1 |
771 |
by matteoferla Mon, 2021-12-13 02:27 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
1 |
771 |
by nannemdp Sun, 2021-06-06 09:26 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
770 |
by ate Sat, 2021-05-01 02:52 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
760 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
0 |
760 |
by YuFei Wed, 2020-04-22 17:27 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
0 |
758 |
by nferruz Fri, 2020-08-28 06:05 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
1 |
757 |
by rmoretti Tue, 2021-11-30 07:41 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
2 |
747 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
1 |
745 |
by gezmi Sat, 2021-11-06 15:26 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
0 |
743 |
by kalabharath Mon, 2020-06-29 06:59 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
0 |
741 |
by rohi Mon, 2021-03-15 06:31 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
1 |
736 |
by lanselibai Wed, 2021-06-23 14:53 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
735 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
0 |
734 |
by haom Tue, 2020-09-01 18:50 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
0 |
731 |
by chrisHKL Mon, 2020-02-17 09:12 |
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