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Rosetta 3 - General

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Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
2,170 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
2,750 by smlewis
Fri, 2014-02-28 05:45
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,991 by rmoretti
Mon, 2017-05-15 09:03
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
1
458 by rmoretti
Mon, 2022-09-12 06:58
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
2,271 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,830 by rmoretti
Mon, 2014-04-21 06:48
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,537 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
542 by matteoferla
Fri, 2022-06-17 10:38
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
1,032 by rmoretti
Tue, 2021-02-09 10:48
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
761 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,516 by mpacella
Mon, 2014-04-21 06:47
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,247 by rmoretti
Thu, 2015-04-02 12:52
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,636 by rmoretti
Tue, 2016-07-12 08:48
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
1,394 by rmoretti
Mon, 2019-08-26 15:01
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
1,369 by rmoretti
Thu, 2018-02-22 09:29
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,480 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
1,005 by rmoretti
Tue, 2021-04-20 13:06
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,544 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,406 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,920 by rmoretti
Sun, 2016-02-21 06:38
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,819 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
1,277 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,189 by matteoferla
Sat, 2020-06-20 03:56
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,214 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
723 by mb0261
Mon, 2022-09-26 07:50
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
2,618 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
2,089 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,446 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
3,211 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
2,095 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
2,156 by smlewis
Mon, 2014-04-21 06:47
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
3,292 by rmoretti
Mon, 2014-04-21 06:47
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,323 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,260 by IAndre
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,144 by rmoretti
Mon, 2014-12-15 02:37
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,942 by rmoretti
Thu, 2016-04-28 15:49
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,306 by connyyu
Thu, 2019-04-18 03:26
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,187 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
1,026 by rmoretti
Wed, 2021-06-23 02:17
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
1,974 by smlewis
Mon, 2014-04-21 06:47
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,969 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,715 by amelie
Tue, 2014-09-30 14:29
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,432 by Loki01
Wed, 2017-12-13 05:27
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,358 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
1,152 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
1
607 by aneeqh
Fri, 2022-09-02 13:36
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
3,036 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
32,806 by smlewis
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,993 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,827 by rmoretti
Fri, 2015-07-03 13:51
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,428 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,343 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,547 by jtmacd
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,881 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,319 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,884 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
3,495 by smlewis
Tue, 2017-04-18 08:33
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
824 by lanselibai
Wed, 2021-06-23 14:53
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
459 by rmoretti
Tue, 2022-09-06 08:13
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
2,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,022 by fred
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
2,021 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,475 by rmoretti
Wed, 2018-11-21 14:14
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
582 by ajasja
Mon, 2022-05-23 07:19
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,848 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,505 by rmoretti
Tue, 2015-07-14 15:27
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,102 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,933 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,710 by smlewis
Wed, 2017-06-28 06:59
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,393 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
970 by zivben
Sat, 2021-07-31 08:16
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
2,002 by sid
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
2,075 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,278 by achambe
Wed, 2016-01-13 10:46
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,484 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,398 by rmoretti
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,016 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,896 by nawsad
Wed, 2014-06-25 13:26
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
2,027 by rmoretti
Wed, 2015-09-02 12:48
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,576 by smlewis
Wed, 2016-08-24 07:23
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,179 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
924 by rmoretti
Tue, 2021-02-09 10:29
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
2,019 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
2,270 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,728 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,451 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
2,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predicting conformations of mutated residues
by Delfosse57 » Tue, 2023-08-22 12:26
1
75 by rmoretti
Wed, 2023-08-23 08:26
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,273 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
2,963 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,621 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,666 by rmoretti
Wed, 2019-04-03 09:31
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,583 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
883 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,141 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,369 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,852 by rmoretti
Tue, 2016-09-13 07:41
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,492 by smlewis
Mon, 2014-04-21 06:47
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