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Rosetta 3 - General

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Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
2,309 by yarovoy
Wed, 2016-03-30 12:37
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,825 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,386 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
2,311 by smlewis
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
3,491 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
1,786 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
1,551 by rmoretti
Wed, 2020-04-01 10:10
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
1,025 by matteoferla
Fri, 2022-06-03 01:09
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
1,626 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic Help with filtering (Rosetta scripts)
by wentlewi » Sat, 2020-10-24 10:12
1
1,495 by rmoretti
Tue, 2021-02-09 12:35
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,774 by smlewis
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,510 by rmoretti
Fri, 2015-07-03 13:04
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,477 by rmoretti
Mon, 2019-11-04 12:54
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
1,533 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
1
741 by rmoretti
Mon, 2023-02-06 14:35
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
2,099 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
3,439 by franfdez
Mon, 2014-04-21 06:47
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,587 by smlewis
Fri, 2019-06-28 13:56
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
1,241 by matteoferla
Mon, 2021-08-09 01:53
Normal topic Scripts and/or strategies for saturation mutagenesis simulations?
by drinker615 » Tue, 2024-04-16 18:43
1
299 by rmoretti
Thu, 2024-06-20 13:39
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,924 by rmoretti
Mon, 2018-02-05 15:44
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
1,672 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
2,245 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
5,249 by rmoretti
Mon, 2017-11-06 07:36
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
1,733 by smlewis
Tue, 2018-08-07 16:59
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
1,610 by brownbp1
Tue, 2021-02-09 12:12
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,942 by smlewis
Mon, 2014-04-21 06:47
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,811 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
4,020 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
2,281 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
1,532 by rmoretti
Mon, 2019-08-26 14:52
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
1,235 by asbelx
Wed, 2021-09-08 23:19
Normal topic Question about blueprint file generation
by ng98 » Fri, 2024-05-24 03:02
1
178 by rmoretti
Thu, 2024-06-20 13:25
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
2,572 by smlewis
Fri, 2014-11-07 12:03
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
2,170 by nannemdp
Tue, 2020-05-26 06:33
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,524 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
2,217 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
3,608 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
2,355 by smlewis
Mon, 2018-03-12 09:57
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
1,618 by rmoretti
Wed, 2019-04-03 10:03
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
1,352 by windmill
Thu, 2020-06-18 21:32
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
2,338 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,470 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,952 by rmoretti
Thu, 2016-09-08 07:56
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,973 by rmoretti
Sat, 2017-12-02 10:22
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,676 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
1,834 by rmoretti
Wed, 2021-02-03 14:45
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
796 by rmoretti
Fri, 2023-02-24 13:58
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
4,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
2,503 by wlzhang
Sun, 2014-04-20 18:17
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
2,043 by ssrb
Tue, 2016-07-12 10:02
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
1,519 by rmoretti
Tue, 2020-10-13 11:40
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
3,044 by IAndre
Mon, 2014-04-21 06:47
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
4,347 by rmoretti
Tue, 2018-04-10 16:00
Normal topic [Question] How do the <FILTERS> confidence work?
by jrom » Wed, 2024-01-24 10:25
1
390 by rmoretti
Wed, 2024-01-24 11:55
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
3,145 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
2,511 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,804 by jyy
Mon, 2020-01-13 17:19
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,545 by smlewis
Mon, 2014-04-21 06:47
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
2,232 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
2,517 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
2,369 by rmoretti
Mon, 2014-06-09 10:05
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
3,353 by rmoretti
Fri, 2015-07-03 13:24
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
2,244 by frichter
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
2,637 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
2,003 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
1,499 by matteoferla
Fri, 2020-07-24 03:06
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
3,168 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
2,254 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,816 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
2,326 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,913 by rmoretti
Fri, 2017-09-08 15:15
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,701 by yuvals
Sat, 2014-06-21 02:17
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
1,463 by rmoretti
Tue, 2021-02-09 11:30
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,578 by smlewis
Mon, 2014-04-21 06:47
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
2,219 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,641 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
3,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,957 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,532 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
2,641 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,812 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,489 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
33,054 by smlewis
Mon, 2014-04-21 06:47
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
2,111 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,913 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
3,668 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,751 by rmoretti
Tue, 2021-02-09 09:37
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
2,342 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,954 by kaue
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
4,676 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
1,374 by cryosky
Fri, 2021-09-17 22:04
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,563 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
2,448 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,632 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,761 by rmoretti
Mon, 2018-03-19 09:08
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