I want to repair my missing residues by loop modeling. As it has shown In the demos and tutorial, I should have a file like x_missing_loop.pdb
it is like main pdb file of target protein BUT it hase something called table energy pose bellow it. How I should make this table energy pose. ???? tutorial has not said anything about making this table energy pose
I have attached that input file from demos, please explain how I can make table pose energy which is under cordinations data?
That pose energy table is a standard feature of Rosetta output. It's output primarily for information purposes. It isn't read back in when you read in a PDB into Rosetta.
The demos/tutorials examples have that table in the input structure, as the input structure came from a previous run of Rosetta. But you don't necessarily need to have that table for the loop modeling to work (and Rosetta will ignore it even if it is present.)