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ligand_docking ligand preparation

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ligand_docking ligand preparation

Can everyone tell me why my ligand FMN is twisted after using script to prepare param file? It still looks normal when I open with pymol. But it looks twisted after I open with Maestro. 

Does anyone have similar experiences? 

FMN-after param converted.pdb4.11 KB
Post Situation: 
Thu, 2020-05-21 10:21

It's probably to ask that on a Schrödinger forum.  I don't think it's a Rosetta-end problem.  The ligand wasn't twisted when I opened it in Pymol, and I don't have access to Maestro.

Thu, 2020-05-21 19:34

I experienced the same issue. My colleagues suggest me do not us Mastroe 

Wed, 2020-06-24 12:38