I'm trying to predict the structure of an antibody by following this Rosetta Antibody Modelling tutorial: https://meilerlab.org/wp-content/uploads/2022/02/RosettaAntibody_tutorial.pdf
At the 5th step, during the refinement of the model, I find the following error:
[ ERROR ]: Caught exception: File: src/utility/options/OptionCollection.cc:1467 Option matching -antibody:remodel not found in command line top-level context Did you mean: -loops:remodel -remodel
This is the command line I'm using:
/home/user/Rosetta/main/source/bin/antibody_H3.linuxclangrelease @abH3.flags -s ./model-0.relaxed.pdb -nstruct 1 -auto_generate_h3_kink_constraint -h3_loop_csts_hr -out:file:sc orefile H3_modeling_scores.fasc -out:path:pdb .
Any kind of help would be very appreciated! I will be attaching the crash log for this error on the post.