I want to refine my pdb file,but it has multiple breaks or has multiple loops missing resi

Take 6A5E for example,it has multiple breaks. i try to feed a blueprint file with all loops,however it turn out only the first loop was remodel .guess what when i view it in pymol i still got the same number of break .

here is my command$> mpiexec -np 18 remodel.cxx11threadmpiserialization.linuxgccrelease @missing_resi_loop

and my flag file 

-loops
-in:file:s FER-LLG2.pdb
-remodel:blueprint ferllgb.remodel

-run:chain B
-remodel:num_trajectory 1
-remodel:quick_and_dirty

-out:path:all output_files
-out:file:scorefile all_missing_loops.sc