Hi,
I observed that the current default number of Monter Carlo cycles (-cycles option) for rna_denovo is 100000. If it is reduced to 20000, does it significantly affect the accuracy of the models built?
TIA,
Mandar
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Hi,
I observed that the current default number of Monter Carlo cycles (-cycles option) for rna_denovo is 100000. If it is reduced to 20000, does it significantly affect the accuracy of the models built?
TIA,
Mandar
It'll probably be fine unless the number of nucleotides with unknown conformation (i.e., to be modeled; not counting helices or elements input from templates) is quite large, say 50+.
thanks!