I am trying to create docking poses using D110_DNA_interface.py. For my application I do not need extremely accurate poses (RMSD<0.5) to be created, is there anyway to limit the number of cycles the scripts runs through to create a pose? Ideally, I want to create poses in the range of RMSD between 1-20 angstroms.
I tried using the "Custom docking" commands in the same sample script to change the number of cycles but get the following error:
AttributeError: 'DockMCMCycle' object has no attribute 'get'.