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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
19,558 by Sergey
Fri, 2015-09-04 16:14
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51
1
92 by rmoretti
Thu, 2022-07-21 07:14
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
180 by rmoretti
Mon, 2022-06-06 12:35
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
224 by Roberto
Thu, 2022-01-06 01:43
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59
2
233 by Ken
Fri, 2022-05-06 07:03
Normal topic How does min_mover work?
by anidude » Fri, 2022-03-04 07:30
1
289 by matteoferla
Sun, 2022-03-20 02:53
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48
1
289 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39
0
341 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic any examples of calling SnugDock from pyrosetta?
by antonkulaga » Thu, 2021-12-23 16:13
1
343 by matteoferla
Mon, 2022-01-10 07:14
Normal topic Acessing energies terms from energy.show() table
by João Sartori » Mon, 2022-02-07 07:56
2
393 by João Sartori
Wed, 2022-02-09 04:35
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54
1
453 by tsztain
Sun, 2021-08-29 11:15
Normal topic Hydrogen Bonding Distances and Atom identification
by kmolloy717 » Fri, 2021-06-25 08:15
1
479 by matteoferla
Wed, 2021-06-30 09:02
Normal topic Questions of Cartesian_ddG calculation in PyRosetta
by CKS2001 » Fri, 2022-01-07 01:36
2
481 by CKS2001
Sat, 2022-01-08 02:14
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26
0
488 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
494 by matteoferla
Sat, 2021-04-10 07:18
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34
0
515 by publicclass
Thu, 2020-11-05 09:34
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
528 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00
0
535 by mm
Wed, 2020-07-22 03:02
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02
0
559 by jetu20
Sun, 2020-10-11 21:02
Normal topic Pose is full atom and mover expects centroid, how do I handle it the best?
by hlinn » Thu, 2022-01-27 05:55
4
566 by hlinn
Tue, 2022-02-08 07:23
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
572 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
603 by wentlewi
Thu, 2020-05-07 12:33
Normal topic Explicit water
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic Less silly way to get number of iterations of Relax
by matteoferla » Tue, 2021-07-20 07:00
2
653 by matteoferla
Tue, 2021-07-20 13:44
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05
2
676 by Eden
Mon, 2021-06-14 23:10
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
682 by matteoferla
Wed, 2020-12-02 13:49
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
699 by matteoferla
Tue, 2021-03-30 08:20
Normal topic How to relax glycans after glycosylating sites on a pose?
by sdtruong » Mon, 2021-03-22 09:44
2
713 by sdtruong
Mon, 2021-03-22 17:05
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
739 by matteoferla
Sun, 2020-03-01 02:38
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
752 by nleroy
Mon, 2019-07-22 07:51
Normal topic restricted fast relax changes whole structure?
by patcD » Wed, 2021-08-25 02:05
2
754 by patcD
Wed, 2021-09-01 03:30
Normal topic How do I insert or delete residues into specific locations?
by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03
1
761 by matteoferla
Tue, 2021-01-05 03:53
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37
0
763 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
2
774 by vmulligan
Mon, 2021-03-29 10:39
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
814 by matteoferla
Wed, 2021-04-07 06:50
Normal topic FastRelax results in bad structure
by Eden » Mon, 2021-04-26 08:39
2
830 by Eden
Wed, 2021-06-23 01:13
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
831 by smlewis
Tue, 2020-09-29 12:00
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44
0
848 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Error with importing the pdb file
by nasim.soltani58 » Fri, 2020-12-18 22:46
1
862 by matteoferla
Tue, 2021-01-05 04:05
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06
1
878 by matteoferla
Wed, 2020-07-01 05:30
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02
0
910 by matteoferla
Mon, 2020-08-24 09:02
Normal topic Atom-wise energy terms from nearest N-neighbors
by jasiozaucha » Thu, 2021-03-25 14:49
3
917 by matteoferla
Fri, 2021-05-28 02:41
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19
2
926 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic Different types of MinMover
by nasim.soltani58 » Sun, 2020-12-20 11:44
2
944 by nasim.soltani58
Tue, 2020-12-22 13:37
Normal topic How to create an ObjexxFCL FArray?
by matteoferla » Tue, 2020-08-18 03:22
3
953 by matteoferla
Thu, 2021-07-08 06:02
Normal topic Individual Residue Energy
by Peik » Fri, 2021-02-19 10:13
2
992 by Peik
Fri, 2021-02-19 10:30
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50
1
1,015 by rmoretti
Mon, 2021-03-29 06:53
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
1,015 by tschiex
Sun, 2017-11-05 08:29
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
1,030 by rmoretti
Tue, 2019-07-09 09:42
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
1,060 by ac.research
Thu, 2018-03-29 07:50
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
1,144 by matteoferla
Fri, 2020-11-20 07:47
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
1,147 by matteoferla
Thu, 2020-04-30 12:04
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
1,163 by rmoretti
Thu, 2019-05-09 15:06
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
1,213 by rmoretti
Wed, 2019-07-10 10:17
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
1,220 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
1,265 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Alternatives to DockMCMProtocol
by swirt » Thu, 2021-01-28 17:37
4
1,270 by swirt
Thu, 2021-02-25 21:54
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
1,273 by sylvia
Mon, 2014-04-21 06:47
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
1,281 by ralford
Wed, 2018-12-19 03:20
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02
0
1,283 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
1,290 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
1,307 by rmoretti
Fri, 2017-12-01 10:25
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,318 by Victor
Mon, 2014-04-21 06:47
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
1,325 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54
0
1,368 by sid
Mon, 2014-04-21 06:47
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
1,372 by rmoretti
Sat, 2017-12-16 10:47
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57
0
1,378 by batch2k
Mon, 2014-04-21 06:47
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02
3
1,383 by vmulligan
Tue, 2020-10-06 15:13
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54
0
1,386 by jurkm
Mon, 2014-04-21 06:47
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
1,387 by yijietseng
Wed, 2019-07-10 09:28
Normal topic How to tell where and what fragment or rotamer was inserted?
by charlie.strauss » Wed, 2010-01-27 10:36
0
1,388 by charlie.strauss
Mon, 2014-04-21 06:47
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39
3
1,402 by Peik
Thu, 2020-08-06 11:50
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37
0
1,404 by tevang
Mon, 2014-04-21 06:47
Normal topic Gunn fragment insertion
by jadolfbr » Sun, 2010-02-28 09:39
0
1,414 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
1,415 by rmoretti
Thu, 2019-05-09 15:56
Normal topic Folding Video
by ac.research » Sat, 2018-05-12 09:19
1
1,428 by rmoretti
Sat, 2018-06-30 02:38
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,462 by Sergey
Mon, 2014-04-21 06:47
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
1,464 by yijietseng
Fri, 2019-05-31 12:21
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58
0
1,469 by cbala
Mon, 2014-04-21 06:47
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
1,474 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
1,482 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,491 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
1,494 by matteoferla
Fri, 2020-07-10 02:20
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
1,501 by rmoretti
Mon, 2019-06-24 12:54
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
1,503 by tfobe
Mon, 2019-05-20 16:05
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
1,512 by rmoretti
Sat, 2018-06-30 02:37
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
1,514 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16
0
1,520 by sharang
Mon, 2014-04-21 06:47
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58
0
1,520 by Sergey
Mon, 2014-04-21 06:47
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43
0
1,524 by jwillis
Mon, 2014-04-21 06:47
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by aushawxian » Sun, 2018-01-28 20:21
1
1,531 by walcob
Mon, 2018-01-29 11:22
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55
1
1,536 by rmoretti
Sat, 2018-06-30 02:38
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
1,536 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,538 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39
0
1,542 by blubbi
Mon, 2014-04-21 06:47
Normal topic small molecule docking
by sharang » Mon, 2010-08-02 14:57
0
1,559 by sharang
Mon, 2014-04-21 06:47
Normal topic Updating Coords
by jadolfbr » Sat, 2010-01-30 10:33
0
1,570 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
1,572 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53
3
1,573 by rmoretti
Thu, 2020-07-09 08:35
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,576 by AndrewBworth
Mon, 2014-04-21 06:47

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