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FAQ by admin » Mon, 2010-08-30 01:38 |
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19,558 |
by Sergey Fri, 2015-09-04 16:14 |
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"corrupted" small molecules. aromatic rings get distortet during relax by patcD » Thu, 2022-07-21 04:51 |
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92 |
by rmoretti Thu, 2022-07-21 07:14 |
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403 on documentation for PyRosetta by matteoferla » Mon, 2022-06-06 12:19 |
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180 |
by rmoretti Mon, 2022-06-06 12:35 |
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Collect data about the modelling by Roberto » Thu, 2022-01-06 01:43 |
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224 |
by Roberto Thu, 2022-01-06 01:43 |
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Is this the intended behaviour? by Ken » Thu, 2022-05-05 14:59 |
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233 |
by Ken Fri, 2022-05-06 07:03 |
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How does min_mover work? by anidude » Fri, 2022-03-04 07:30 |
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289 |
by matteoferla Sun, 2022-03-20 02:53 |
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Atom mapping in RMSD functions by gkell » Tue, 2022-02-15 15:48 |
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289 |
by rmoretti Fri, 2022-02-18 10:23 |
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Symmetry breaks due to small structure gaps by dbiedermann » Mon, 2021-09-20 17:39 |
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341 |
by dbiedermann Mon, 2021-09-20 17:40 |
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any examples of calling SnugDock from pyrosetta? by antonkulaga » Thu, 2021-12-23 16:13 |
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343 |
by matteoferla Mon, 2022-01-10 07:14 |
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Acessing energies terms from energy.show() table by João Sartori » Mon, 2022-02-07 07:56 |
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393 |
by João Sartori Wed, 2022-02-09 04:35 |
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Molfile to params creating invalid params output by edan » Sun, 2021-08-29 01:54 |
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453 |
by tsztain Sun, 2021-08-29 11:15 |
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Hydrogen Bonding Distances and Atom identification by kmolloy717 » Fri, 2021-06-25 08:15 |
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479 |
by matteoferla Wed, 2021-06-30 09:02 |
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Questions of Cartesian_ddG calculation in PyRosetta by CKS2001 » Fri, 2022-01-07 01:36 |
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481 |
by CKS2001 Sat, 2022-01-08 02:14 |
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How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:26 |
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488 |
by michelleqyh Tue, 2020-08-04 07:26 |
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Pyrosetta score protein structures with missing atoms in sidechain by xuezhi » Fri, 2021-04-09 13:33 |
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494 |
by matteoferla Sat, 2021-04-10 07:18 |
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Structure not changing after pose.set_phi by publicclass » Thu, 2020-11-05 09:34 |
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515 |
by publicclass Thu, 2020-11-05 09:34 |
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Compile C++ Rosetta to Pyrosetta by michelleqyh » Fri, 2020-08-21 08:44 |
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528 |
by michelleqyh Fri, 2020-08-21 08:44 |
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Segfault when loading scorefxn() and load_from_pdb() by mm » Wed, 2020-07-22 03:00 |
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535 |
by mm Wed, 2020-07-22 03:02 |
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WindowsError: [Error 32] by jetu20 » Sun, 2020-10-11 21:02 |
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559 |
by jetu20 Sun, 2020-10-11 21:02 |
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Pose is full atom and mover expects centroid, how do I handle it the best? by hlinn » Thu, 2022-01-27 05:55 |
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by hlinn Tue, 2022-02-08 07:23 |
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Python3.8 release for Mac download is a dead link by noahC_noahDo » Fri, 2020-06-26 18:20 |
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572 |
by noahC_noahDo Fri, 2020-06-26 18:20 |
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Affinity optimization with GreedyOptMutationMover by wentlewi » Thu, 2020-05-07 08:29 |
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603 |
by wentlewi Thu, 2020-05-07 12:33 |
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Explicit water This topic has been moved to "Rosetta 3 - General " (View topic) |
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Less silly way to get number of iterations of Relax by matteoferla » Tue, 2021-07-20 07:00 |
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by matteoferla Tue, 2021-07-20 13:44 |
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pyrosetta die slow by Eden » Sun, 2021-06-13 00:05 |
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676 |
by Eden Mon, 2021-06-14 23:10 |
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Extending Pyrosetta toturials for docking by adding constraints by nasim.soltani58 » Thu, 2020-11-26 13:16 |
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682 |
by matteoferla Wed, 2020-12-02 13:49 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
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699 |
by matteoferla Tue, 2021-03-30 08:20 |
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How to relax glycans after glycosylating sites on a pose? by sdtruong » Mon, 2021-03-22 09:44 |
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713 |
by sdtruong Mon, 2021-03-22 17:05 |
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Pyrosetta imported after rdkit by matteoferla » Sun, 2020-03-01 02:38 |
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739 |
by matteoferla Sun, 2020-03-01 02:38 |
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PyMOLMover object has no attribute 'link' by nleroy » Mon, 2019-07-22 07:51 |
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752 |
by nleroy Mon, 2019-07-22 07:51 |
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restricted fast relax changes whole structure? by patcD » Wed, 2021-08-25 02:05 |
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754 |
by patcD Wed, 2021-09-01 03:30 |
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How do I insert or delete residues into specific locations? by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 |
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761 |
by matteoferla Tue, 2021-01-05 03:53 |
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How to fold-and-dock in PyRosetta? by sarah_b » Thu, 2020-05-14 02:37 |
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763 |
by sarah_b Thu, 2020-05-14 02:37 |
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Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
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774 |
by vmulligan Mon, 2021-03-29 10:39 |
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Best way to store a pose by Pyrosetta for Pyrosetta by matteoferla » Wed, 2021-04-07 06:50 |
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814 |
by matteoferla Wed, 2021-04-07 06:50 |
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FastRelax results in bad structure by Eden » Mon, 2021-04-26 08:39 |
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830 |
by Eden Wed, 2021-06-23 01:13 |
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"Server Could Not Be Reached" although I have an Internet connection by epi89 » Mon, 2020-09-28 21:32 |
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831 |
by smlewis Tue, 2020-09-29 12:00 |
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trRosetta modelling with a ligand by ShiranBZ » Tue, 2020-08-25 01:44 |
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848 |
by ShiranBZ Tue, 2020-08-25 01:44 |
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Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
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862 |
by matteoferla Tue, 2021-01-05 04:05 |
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Interface Analyzer with Glycans by drewaight » Tue, 2020-06-09 20:06 |
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878 |
by matteoferla Wed, 2020-07-01 05:30 |
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Suggestion: setting Sphinx documentation to not skip __init__ by matteoferla » Mon, 2020-08-24 09:02 |
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910 |
by matteoferla Mon, 2020-08-24 09:02 |
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Atom-wise energy terms from nearest N-neighbors by jasiozaucha » Thu, 2021-03-25 14:49 |
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917 |
by matteoferla Fri, 2021-05-28 02:41 |
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Assesing the docking by nasim.soltani58 » Sat, 2020-12-05 21:19 |
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926 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
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Different types of MinMover by nasim.soltani58 » Sun, 2020-12-20 11:44 |
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944 |
by nasim.soltani58 Tue, 2020-12-22 13:37 |
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How to create an ObjexxFCL FArray? by matteoferla » Tue, 2020-08-18 03:22 |
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953 |
by matteoferla Thu, 2021-07-08 06:02 |
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Individual Residue Energy by Peik » Fri, 2021-02-19 10:13 |
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992 |
by Peik Fri, 2021-02-19 10:30 |
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Calculate TM-score by nasim.soltani58 » Fri, 2021-03-26 16:50 |
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1,015 |
by rmoretti Mon, 2021-03-29 06:53 |
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rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working by tschiex » Sun, 2017-11-05 08:29 |
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1,015 |
by tschiex Sun, 2017-11-05 08:29 |
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Score bonus to hbond by yijietseng » Fri, 2019-07-05 12:28 |
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1,030 |
by rmoretti Tue, 2019-07-09 09:42 |
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cleanATOM() for non-ideal amino acids by ac.research » Thu, 2018-03-29 07:50 |
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1,060 |
by ac.research Thu, 2018-03-29 07:50 |
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how do i unding properly? by patcD » Fri, 2020-11-20 00:38 |
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1,144 |
by matteoferla Fri, 2020-11-20 07:47 |
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pose_from_rcsb error by criss.hartzell » Wed, 2020-04-22 15:12 |
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1,147 |
by matteoferla Thu, 2020-04-30 12:04 |
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Adding Custom AtomTypes to Pyrosetta by garrettameek » Wed, 2019-03-13 15:06 |
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1,163 |
by rmoretti Thu, 2019-05-09 15:06 |
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PyRosetta on a HPC by ac.research » Thu, 2019-03-14 02:00 |
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1,213 |
by rmoretti Wed, 2019-07-10 10:17 |
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Need help figuring out the meaning and cause of an error by AleksanderK » Fri, 2019-05-03 11:02 |
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1,220 |
by rmoretti Thu, 2019-05-09 14:32 |
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Passing a dictionary from pyrosetta to rosetta by SenyorDrew » Mon, 2017-11-13 11:33 |
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1,265 |
by rmoretti Fri, 2017-12-01 10:10 |
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Alternatives to DockMCMProtocol by swirt » Thu, 2021-01-28 17:37 |
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1,270 |
by swirt Thu, 2021-02-25 21:54 |
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PyRosetta 1.1 for Windows? by sylvia » Tue, 2010-02-09 16:06 |
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1,273 |
by sylvia Mon, 2014-04-21 06:47 |
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Changing the membrane Thickness (THKN) by jlapin » Mon, 2018-11-12 06:32 |
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1,281 |
by ralford Wed, 2018-12-19 03:20 |
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PyRosetta v1.1 by jadolfbr » Tue, 2010-02-09 08:02 |
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1,283 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Custom Constraints by jinli711 » Wed, 2020-07-15 15:22 |
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1,290 |
by matteoferla Fri, 2020-10-09 05:20 |
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Determine residues where Backrub Mover is applied by jferrie » Fri, 2017-10-27 08:19 |
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1,307 |
by rmoretti Fri, 2017-12-01 10:25 |
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New files for loop modeling by Victor » Fri, 2012-02-03 14:36 |
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1,318 |
by Victor Mon, 2014-04-21 06:47 |
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ΔG Calculation with PyRosetta by Sandra » Tue, 2019-05-21 00:26 |
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1,325 |
by rmoretti Mon, 2019-06-24 12:47 |
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Announcements by sid » Fri, 2009-10-02 08:54 |
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1,368 |
by sid Mon, 2014-04-21 06:47 |
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Minimization not changing jump edge vector length by bio_james » Tue, 2017-12-12 09:32 |
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1,372 |
by rmoretti Sat, 2017-12-16 10:47 |
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DockingSlideIntoContact does not work by batch2k » Wed, 2010-02-17 05:57 |
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1,378 |
by batch2k Mon, 2014-04-21 06:47 |
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Gradient Descent by nasim.soltani58 » Thu, 2020-10-01 16:02 |
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1,383 |
by vmulligan Tue, 2020-10-06 15:13 |
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Question Regarding Usage of Specific Rosetta Tools in PyRosetta by jurkm » Thu, 2010-07-22 23:54 |
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1,386 |
by jurkm Mon, 2014-04-21 06:47 |
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set_torsion_angle error by yijietseng » Tue, 2019-07-09 12:43 |
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1,387 |
by yijietseng Wed, 2019-07-10 09:28 |
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How to tell where and what fragment or rotamer was inserted? by charlie.strauss » Wed, 2010-01-27 10:36 |
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1,388 |
by charlie.strauss Mon, 2014-04-21 06:47 |
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Generating Atom Pair Constraints by Peik » Wed, 2020-08-05 15:39 |
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1,402 |
by Peik Thu, 2020-08-06 11:50 |
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building a 77 amino acid long fragment by tevang » Fri, 2010-02-19 06:37 |
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1,404 |
by tevang Mon, 2014-04-21 06:47 |
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Gunn fragment insertion by jadolfbr » Sun, 2010-02-28 09:39 |
0 |
1,414 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Motif Graft Mover error by ac.research » Tue, 2019-03-26 13:25 |
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1,415 |
by rmoretti Thu, 2019-05-09 15:56 |
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Folding Video by ac.research » Sat, 2018-05-12 09:19 |
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1,428 |
by rmoretti Sat, 2018-06-30 02:38 |
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PyRosetta version 2.011 for Mac/Linux is ready to download! by Sergey » Mon, 2011-11-21 08:51 |
0 |
1,462 |
by Sergey Mon, 2014-04-21 06:47 |
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individual residue score by yijietseng » Wed, 2019-05-29 09:59 |
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1,464 |
by yijietseng Fri, 2019-05-31 12:21 |
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analysis utilities for trajectories by cbala » Mon, 2010-06-14 02:58 |
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1,469 |
by cbala Mon, 2014-04-21 06:47 |
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Modeling small molecules by iGemBoulder » Wed, 2019-09-18 11:53 |
2 |
1,474 |
by rmoretti Wed, 2019-09-18 14:24 |
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Docking between peptide and lipid-biayer by sprinkle166 » Thu, 2017-10-26 08:35 |
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1,482 |
by rmoretti Fri, 2017-12-01 10:34 |
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Can we have email alert for the reply? by lanselibai » Wed, 2014-08-13 13:24 |
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1,491 |
by lanselibai Wed, 2014-08-13 13:24 |
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Adding a residue type to a residue type set by matteoferla » Wed, 2020-07-08 08:14 |
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1,494 |
by matteoferla Fri, 2020-07-10 02:20 |
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Question about the error when using pyrosetta.distributed.io by cuiyoutian » Sun, 2019-05-19 00:54 |
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1,501 |
by rmoretti Mon, 2019-06-24 12:54 |
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Movers for unspecified DoF by tfobe » Wed, 2019-04-17 17:30 |
2 |
1,503 |
by tfobe Mon, 2019-05-20 16:05 |
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GenericMonteCarloMover accept/reject moves by ac.research » Fri, 2018-06-08 06:04 |
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1,512 |
by rmoretti Sat, 2018-06-30 02:37 |
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Output several poses in a silent file by SenyorDrew » Tue, 2018-03-20 07:12 |
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1,514 |
by Martin Floor Tue, 2018-12-11 05:43 |
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residue selection / secondary structure constraints by sharang » Thu, 2010-08-05 10:16 |
0 |
1,520 |
by sharang Mon, 2014-04-21 06:47 |
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Windows version of PyRosetta 2.0 is ready for download! by Sergey » Fri, 2011-02-11 15:58 |
0 |
1,520 |
by Sergey Mon, 2014-04-21 06:47 |
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Architecture question by jwillis » Thu, 2010-02-25 09:43 |
0 |
1,524 |
by jwillis Mon, 2014-04-21 06:47 |
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"Server Could Not Be Reached" although I have an Internet connection by aushawxian » Sun, 2018-01-28 20:21 |
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1,531 |
by walcob Mon, 2018-01-29 11:22 |
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RemodelMover() and the blueprint file by ac.research » Wed, 2018-06-27 03:55 |
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1,536 |
by rmoretti Sat, 2018-06-30 02:38 |
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Pyrosetta protocol to move protein-peptide docked complex closer to active site. by eduardoftoliveira » Fri, 2018-06-29 02:50 |
0 |
1,536 |
by eduardoftoliveira Fri, 2018-06-29 03:46 |
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Non-standard amino acids by mark.wilson » Mon, 2010-08-02 12:13 |
0 |
1,538 |
by mark.wilson Mon, 2014-04-21 06:47 |
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Distance constraints for amino acids pairs by blubbi » Tue, 2010-05-18 05:39 |
0 |
1,542 |
by blubbi Mon, 2014-04-21 06:47 |
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small molecule docking by sharang » Mon, 2010-08-02 14:57 |
0 |
1,559 |
by sharang Mon, 2014-04-21 06:47 |
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Updating Coords by jadolfbr » Sat, 2010-01-30 10:33 |
0 |
1,570 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error when using "generate_resfile_from_pose" function by zhangying1990 » Fri, 2019-01-25 00:45 |
1 |
1,572 |
by zhangying1990 Fri, 2019-02-01 00:44 |
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ERROR: unrecognized element Rp when using pose_from_pdb by johnnytam100 » Thu, 2020-07-09 02:53 |
3 |
1,573 |
by rmoretti Thu, 2020-07-09 08:35 |
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Problems with building bindings. by AndrewBworth » Thu, 2010-02-04 17:26 |
0 |
1,576 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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