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Rosetta 3 - Applications
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,406 |
by nawsad Mon, 2014-04-21 06:48 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
11,458 |
by Run Mon, 2014-04-21 06:48 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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3,834 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,179 |
by rmoretti Mon, 2014-04-21 06:48 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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3,793 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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4,579 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
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16,769 |
by Rosettasz Mon, 2014-04-21 06:48 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,241 |
by rmoretti Mon, 2014-04-21 06:48 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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2,926 |
by tfliu Mon, 2014-04-21 06:48 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,529 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,080 |
by rmoretti Mon, 2014-04-21 06:48 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,368 |
by rmoretti Mon, 2014-04-21 06:48 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
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3,602 |
by agulsevin Mon, 2014-04-21 06:48 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
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3,314 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
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3,296 |
by smlewis Mon, 2014-04-21 06:48 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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3,990 |
by rmoretti Mon, 2014-04-21 06:48 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,366 |
by ast Mon, 2014-04-21 06:48 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,174 |
by ytao Mon, 2014-04-21 06:48 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
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2,936 |
by ast Mon, 2014-04-21 06:48 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
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2,333 |
by rmoretti Mon, 2014-04-21 06:48 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,227 |
by smlewis Mon, 2014-04-21 06:48 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,705 |
by rmoretti Mon, 2014-04-21 06:48 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,448 |
by rmoretti Mon, 2014-04-21 06:48 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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4,788 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
13,310 |
by Basantab Mon, 2014-04-21 06:47 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
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2,891 |
by smlewis Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
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3,823 |
by rmoretti Mon, 2014-04-21 06:47 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
4,364 |
by smlewis Mon, 2014-04-21 06:47 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
11,064 |
by jarod Mon, 2014-04-21 06:47 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
5,782 |
by brspurri Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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3,580 |
by aloshbau Mon, 2014-04-21 06:47 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,490 |
by rmoretti Mon, 2014-04-21 06:47 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,511 |
by jarod Mon, 2014-04-21 06:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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2,996 |
by jadolfbr Mon, 2014-04-21 06:47 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,159 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,282 |
by rmoretti Mon, 2014-04-21 06:47 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,285 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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4,973 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
5 |
5,630 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,105 |
by rmoretti Mon, 2014-04-21 06:47 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
5,714 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,502 |
by jarod Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,361 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,715 |
by rmoretti Mon, 2014-04-21 06:47 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
6,689 |
by jarod Mon, 2014-04-21 06:47 |
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Docking with constraints by ytao » Tue, 2013-04-02 09:45 |
6 |
7,211 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
4,720 |
by yogeshkd Mon, 2014-04-21 06:47 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
7,752 |
by smlewis Mon, 2014-04-21 06:47 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
7,038 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,770 |
by rmoretti Mon, 2014-04-21 06:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
3,741 |
by smlewis Mon, 2014-04-21 06:47 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,155 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,190 |
by weehee Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
13,456 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,541 |
by ronj Mon, 2014-04-21 06:47 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
5,775 |
by yogeshkd Mon, 2014-04-21 06:47 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
2,888 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
1 |
2,152 |
by smlewis Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,245 |
by nawsad Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
6,232 |
by rmoretti Mon, 2014-04-21 06:47 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
9 |
7,493 |
by petrikigor Mon, 2014-04-21 06:47 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
12,230 |
by benniu2004 Mon, 2014-04-21 06:47 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
1 |
2,167 |
by smlewis Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,482 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
2,781 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
0 |
1,580 |
by petrikigor Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
7,643 |
by benniu2004 Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
5 |
5,436 |
by smlewis Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,169 |
by smlewis Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,096 |
by smlewis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
4,364 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
4,003 |
by aroop Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,419 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
8,604 |
by deltag Mon, 2014-04-21 06:47 |
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Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
24 |
17,023 |
by aroop Mon, 2014-04-21 06:47 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
9,311 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
8,426 |
by deltag Mon, 2014-04-21 06:47 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
6,238 |
by dktest Mon, 2014-04-21 06:47 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,600 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,106 |
by smlewis Mon, 2014-04-21 06:47 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,186 |
by smlewis Mon, 2014-04-21 06:47 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,014 |
by pdbb Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
4,949 |
by xfliu Mon, 2014-04-21 06:47 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
5,841 |
by smlewis Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
5,417 |
by rmoretti Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
6,695 |
by rmoretti Mon, 2014-04-21 06:47 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
1 |
2,135 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
13,285 |
by protos_heis Mon, 2014-04-21 06:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
3,869 |
by ytao Mon, 2014-04-21 06:47 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
6,046 |
by albumns Mon, 2014-04-21 06:47 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
19 |
15,670 |
by xpzhang Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
4,519 |
by petrikigor Mon, 2014-04-21 06:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,106 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
9,683 |
by atruong Mon, 2014-04-21 06:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,494 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
6,976 |
by Anonymous Mon, 2014-04-21 06:47 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,663 |
by danielles Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,597 |
by RMJ Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
5,557 |
by eskici Mon, 2014-04-21 06:47 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
6,655 |
by skovacs Mon, 2014-04-21 06:47 |
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