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Rosetta 3 - Applications
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,955 |
by sushreet Tue, 2014-08-26 13:02 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
1 |
2,752 |
by rmoretti Fri, 2014-08-15 08:06 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,888 |
by cam11 Wed, 2014-08-13 10:06 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
9 |
9,693 |
by rmoretti Tue, 2014-08-12 08:15 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
11 |
16,490 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
4,300 |
by protos_heis Tue, 2014-08-05 12:47 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
3,022 |
by rmoretti Mon, 2014-08-04 14:51 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
3,099 |
by franfdez Mon, 2014-07-28 01:04 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,189 |
by rmoretti Sun, 2014-07-27 10:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
1 |
2,521 |
by rmoretti Mon, 2014-07-21 10:51 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,785 |
by felipet Thu, 2014-07-17 10:13 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
1 |
2,356 |
by smlewis Mon, 2014-07-07 11:58 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,980 |
by Pernille Thu, 2014-07-03 07:21 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
5,190 |
by rmoretti Wed, 2014-07-02 16:55 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
0 |
1,492 |
by felipet Wed, 2014-07-02 10:23 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
3,315 |
by felipet Wed, 2014-07-02 07:26 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
2,139 |
by Pernille Fri, 2014-06-20 00:17 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
5,614 |
by rmoretti Tue, 2014-06-17 08:51 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,519 |
by attesor Mon, 2014-06-16 07:34 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,371 |
by ahonegger Fri, 2014-06-06 09:31 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,741 |
by kxiao Thu, 2014-06-05 08:37 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,751 |
by mdidonato Wed, 2014-06-04 14:55 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
0 |
1,543 |
by msk Tue, 2014-06-03 11:09 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
1 |
2,294 |
by rmoretti Mon, 2014-05-26 09:29 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,806 |
by afmo Thu, 2014-05-22 01:19 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
4,014 |
by rmoretti Mon, 2014-05-12 15:16 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,669 |
by rmoretti Mon, 2014-05-12 15:08 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,902 |
by jadolfbr Mon, 2014-05-12 10:41 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,524 |
by ahonegger Mon, 2014-05-12 09:08 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,103 |
by rmoretti Mon, 2014-05-12 08:45 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
3,233 |
by smlewis Mon, 2014-05-12 08:32 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
3,448 |
by rmoretti Mon, 2014-05-12 08:25 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
13,929 |
by rmoretti Thu, 2014-04-24 14:43 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
7,088 |
by rmoretti Mon, 2014-04-21 10:47 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,537 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
7,946 |
by rmoretti Mon, 2014-04-21 06:48 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
5,194 |
by fred Mon, 2014-04-21 06:48 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
5,561 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
3,412 |
by fred Mon, 2014-04-21 06:48 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,313 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,501 |
by rmoretti Mon, 2014-04-21 06:48 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
6 |
6,530 |
by tfliu Mon, 2014-04-21 06:48 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,769 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
4,417 |
by rmoretti Mon, 2014-04-21 06:48 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,685 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
2,715 |
by smlewis Mon, 2014-04-21 06:48 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
5 |
6,148 |
by jadolfbr Mon, 2014-04-21 06:48 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,947 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
3,252 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,786 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
7,842 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,894 |
by rmoretti Mon, 2014-04-21 06:48 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,587 |
by Ashafix Mon, 2014-04-21 06:48 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,667 |
by jadolfbr Mon, 2014-04-21 06:48 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
4,429 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,733 |
by lkrathn Mon, 2014-04-21 06:48 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,892 |
by mumdonar Mon, 2014-04-21 06:48 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
1 |
2,547 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
6,131 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
7,659 |
by rmoretti Mon, 2014-04-21 06:48 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
7,733 |
by rmoretti Mon, 2014-04-21 06:48 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
1 |
2,491 |
by smlewis Mon, 2014-04-21 06:48 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
5,351 |
by wsgosal Mon, 2014-04-21 06:48 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,734 |
by rmoretti Mon, 2014-04-21 06:48 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,917 |
by smlewis Mon, 2014-04-21 06:48 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
3,081 |
by rmoretti Mon, 2014-04-21 06:48 |
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usage of score3 by Run » Sat, 2013-09-28 02:06 |
16 |
17,281 |
by jadolfbr Mon, 2014-04-21 06:48 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
16 |
19,526 |
by Rosettasz Mon, 2014-04-21 06:48 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,705 |
by rmoretti Mon, 2014-04-21 06:48 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
3,372 |
by tfliu Mon, 2014-04-21 06:48 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,874 |
by rmoretti Mon, 2014-04-21 06:48 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
5 |
9,912 |
by rmoretti Mon, 2014-04-21 06:48 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
1 |
2,734 |
by nawsad Mon, 2014-04-21 06:48 |
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About loophash and batchrelax. by Run » Mon, 2013-07-22 23:54 |
14 |
13,479 |
by Run Mon, 2014-04-21 06:48 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
4,375 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
1 |
2,480 |
by rmoretti Mon, 2014-04-21 06:48 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
4,224 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
5,177 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
4 |
5,503 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,543 |
by rmoretti Mon, 2014-04-21 06:48 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,787 |
by rmoretti Mon, 2014-04-21 06:48 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
4,100 |
by agulsevin Mon, 2014-04-21 06:48 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,754 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,690 |
by smlewis Mon, 2014-04-21 06:48 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
4,569 |
by rmoretti Mon, 2014-04-21 06:48 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,902 |
by ast Mon, 2014-04-21 06:48 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
1 |
2,501 |
by ytao Mon, 2014-04-21 06:48 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,367 |
by ast Mon, 2014-04-21 06:48 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,708 |
by rmoretti Mon, 2014-04-21 06:48 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
1 |
2,549 |
by smlewis Mon, 2014-04-21 06:48 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
5,300 |
by rmoretti Mon, 2014-04-21 06:48 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,953 |
by rmoretti Mon, 2014-04-21 06:48 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
6,493 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,993 |
by jarod Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
2,685 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
4,095 |
by rmoretti Mon, 2014-04-21 06:47 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
7,603 |
by jarod Mon, 2014-04-21 06:47 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
15,206 |
by Basantab Mon, 2014-04-21 06:47 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,323 |
by smlewis Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,467 |
by rmoretti Mon, 2014-04-21 06:47 |
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