Hello sir, I am installing rosetta w52 release, when i install Toolbox, it is automatically downloading the NMRPipe, Blast and Genome Database from nih site, and this process taking day by day, so please tell me is this compulsory for this or not??
Firstly let me start by saying that I'm fairly new to Linux, so go easy on the explanations...
I've installed scons and tried to unpack Rosetta but I keep getting the same error:
scons: Reading SConscript files ...
svn_version.py reports this is a non-version-control release version of Rosetta
scons: done reading SConscript files.
scons: Building targets ...
I am trying to build, install, and test rosetta weekly build 49
on a MacBook Pro running Mac OSX 10.9. I had upgraded from
10.6.8 and thought I had worked out all of the issues. My default
python is the Apple version.
Python 2.7.5 (default, Aug 25 2013, 00:04:04)
[GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.0.68)] on darwin
I reinstalled git but I still get a FATAL ERROR message about some issue
with git or the Conscript file.
Running versioning script ... fatal: ambiguous argument 'HEAD': unknown revision or path not in the working tree.
Where can I find a link to the latest weekly release?
https://www.rosettacommons.org/node/3409
> Latest weekly release: 2013wk48 (3-Dec-2013; academic license).
> Now available in the Software page.
It should be in the Software page according to the news above,
though I can see only links to version 3.5 or older in the download page.
Is it only for academic person, not for commercail licensee?
Hello:
I've compiled rosetta-3.5 with command:
scons bin mode=release extra=mpi
before compiling, I've set up the rosetta_source/tools/build/site.settings properly for my MPI environment as following:
import os
openmpiversion="1.4.5"
root="/home/albert/install/openmpi-1.4.5"+openmpiversion
root2="/home/albert/install/openmpi-1.4.5"+openmpiversion
root3="/usr/lib64/mpi/gcc"
settings = {
"gcc, mpi" : {
"overrides" : {
"cxx" : "mpicxx"
},
},
"site" : {
"prepends" : {
"program_path" : [
Hello
I am trying to compile rosetta with mpi options on our linux based university cluster but the compilation fails with the following error,
Before compiling, I copied the site.settings.tacc.lonestar.intel into site.settings in /tools/build/, since in one of the posts it was mentioned that this is suitable for compiling on intel based clusters.
$ ./scons.py bin mode=release extras=mpi
scons: Reading SConscript files ...
Running versioning script ... fatal: Not a git repository (or any of the parent directories): .git
Hi All,
I'm attempting to build Rosetta3.5 on my Mac and keep running into a compiling error with Calculator.os that terminates the build. Any suggestions would be much appreciated. I've also tried building within Xcode, and the build terminates with a number of similar errors (apparently missing files). I downloaded Rosetta3.5 as a single bundle, by the way.
My command line compiler:
[Ryans-iMac:~/applications/rosetta-3.5/rosetta_source] Ryan% gcc -v
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Question about the weekly releases. Is there a way to get these using git?
The packaged downloads are great, but it would be more convenient if we could just get an update to save downloading a new source tree every week or so.
If this is possible could you outline how to do it, or point me in the direction of something that would help? I couldn't find anything in the software section that outlined this.
For those of us who would still like updates but are not in Commons labs at the moment this would be a big help.
Thanks in advance, I miss you guys.
Ben
Hello there, I've been struggling with building Rosetta for about a week now and seem to have gotten myself good and stuck, so I was wondering if I could get some advice. I'm new to both Rosetta and Linux, which I'm sure is not helping. I just installed Fedora 19 after failing at using Cygwin, and I'm still getting lots of problems. I have SCons and gcc now (and subversion which I realize now I don't need but oh, well), but when I attempt to build Rosetta I still get a massive list of errors, almost all ending in
"sh: o: command not found"
Is it possible to download rosetta on windows 8? The reason why I am asking is because I downloaded rosetta 3.5 and got a gz file that wouldnt open.
