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Rosetta 3 - Build/Install

run unit test error

Submitted by PoonamPandey on Sat, 2013-08-24 13:06

python test/run.py -d /rosetta3.2/rosetta_database --mode=release UnitTestExecutable = ["protocols.test", "core.test", "ObjexxFCL.test", "numeric.test", "utility.test", "apps.test", "devel.test"] --mute=MUTE-all
I got following error:
....
Paths: cd build/test/release/linux/3.5/32/x86/gcc/ && command line: ./apps.test --database /rosetta3.2/rosetta_database -mute MUTE-all
Running 1 test
Test suite: LigandDockTest (test/apps/public/ligand_docking/ligand_dock.cxxtest.hh)
core.init: Mini-Rosetta version exported from unknown

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Rosetta 3 - Build/Install

libdevel not found while running Rosetta using mpi

Submitted by priyaps on Thu, 2013-08-08 09:28

Hello Rosetta experts,
I am very new to Rosetta and am trying to compile Rosetta3.4 (tried even Rosetta3.5) on a linux cluster with the following command:
./scons.py bin mode=release extras=mpi -j 12
The installation appears to have finished fine though when I try to run a job using mpirun it gives me the following error:
error while loading shared libraries: libdevel.so: cannot open shared object file: No such file or directory.
From this thread, it appears to me that Rosetta should not ask for libdevel.so library.

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Rosetta 3 - Build/Install

Please help - mpiCC Error

Submitted by Prasanth Kumar on Wed, 2013-07-17 07:46

I'm trying to install mpi version of rosetta-3.4 in cluster.
I got the error when i did "scons bin mode=release extras=mpi (with and without cxx=icc) ", mpiCC : Command not found

In the cluster there is mpicc, mpicxx. There is NO mpic++, mpiCC.

What should i do now?

How do i install mpiCC without administrative previleges?

Please help me:)

Note:- I'm from non cs background.

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Rosetta 3 - Build/Install

invalid error number in diagnostic control option: 2259

Submitted by amin_sagar on Fri, 2013-07-12 03:52

Dear rosetta users,
I am trying to install rosetta with mpi. I was able to install without mpi without any errors but with mpi I am getting the following error.

scons: Reading SConscript files ...
svn_version.py reports this is a non-version-control release version of Rosetta
scons: done reading SConscript files.
scons: Building targets ...

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Rosetta 3 - Build/Install

Build only specified objectfile

Submitted by Prasanth Kumar on Wed, 2013-07-10 16:33

Hi,
I would like to install .exe for only fixbb, ligrpkmin, liganddock.

From rosetta manual i got the below:-

Build only specified objectfile
scons /

So where exactly are the object file ; I would be happy if you could give a working example for a particular .exe.

Also i want mpi in it. Will just adding extras=mpi is enough.

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Rosetta 3 - Build/Install

Changing constraints code and compiling

Submitted by Ashafix on Sat, 2013-07-06 05:13

Dear Rosetta community,

after reading a lot of helpful posts I managed to compile Rosetta 3.4 on Ubuntu 11.04 in a virtual machine on Windows 7. It runs without any problems and abinitio folding actually works.
I wanted to add a new constraint function (just to test some weird idea, don't ask), unfortunately I neither speak C++, nor understand how the inner organs of Rosetta work.

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Rosetta 3 - Build/Install

Do I need to uninstall rosetta before installing the MPI version?

Submitted by ritacc18 on Tue, 2013-07-02 14:24

Hi,

I want to make the Rosetta 3.4 paralleled. But I have installed the ordinary one previously.

Do I need to uninstall it and then install the MPI one? If so, is there a command to uninstall Rosetta, or I just need to delete the rosetta folder?

I know I just need to add "extras=mpi" in the command.

Thanks for your help!

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Rosetta 3 - Build/Install

Error in Building Environment Options

Submitted by anamika on Wed, 2013-05-01 02:12

I have done the building part in installation by typing

scons bin
scons bin mode=release

which says "scons: done building targets"

Now next step is Additional Build Environment Options for which i get

scons bin my_pilot_apps

**scons: building terminated because of errors**

Could you please tell me what is the next step to be followed after building. how to make File target `my_pilot_apps'?

Please help!

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Rosetta 3 - Build/Install

Rosetta3.4 on Mac 10.6.8

Submitted by gz on Mon, 2013-04-15 10:42

I tried to install rosetta on a Mac OS 10.6.8.

I tried:
scons bin mode=release

And get following message:
scons: Reading SConscript files ...
Running versioning script ... fatal: Not a git repository (or any of the parent directories): .git
Done. (0.5 seconds)
scons: done reading SConscript files.
scons: Building targets ...

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Rosetta 3 - Build/Install

mpi building error

Submitted by zeusmaster on Thu, 2013-03-21 07:07

Hey everyone, I'm trying to compile in mpi mode on a cluster. I used:
./scons.py bin mode=release cxx=icc extras=mpi

First, everything looked good but almost after 3 hours latter i had an error;


src/protocols/features/ReportToDB.cc(107): warning #780: using-declaration ignored -- it refers to the current namespace
using protocols::features::ProteinRMSDFeatures;
^
src/protocols/features/ReportToDB.cc(108): warning #780: using-declaration ignored -- it refers to the current namespace
using protocols::features::ProtocolFeatures;
^

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