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Rosetta 3 - General

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Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
0
480 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,450 by connyyu
Thu, 2019-04-18 03:26
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
3,946 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
2,093 by rmoretti
Tue, 2016-07-12 08:43
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
28,515 by omirus
Mon, 2014-04-21 06:48
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
5,217 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,628 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
2,623 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
0
467 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
634 by guowuchen
Thu, 2022-06-23 04:43
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
5,771 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,338 by rmoretti
Tue, 2021-02-09 12:25
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
33
33,398 by jyy
Wed, 2019-02-20 00:30
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
2,255 by ac.research
Fri, 2017-08-18 00:53
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
59,223 by rmoretti
Fri, 2015-07-03 13:29
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
4,077 by rmoretti
Mon, 2014-04-21 06:48
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
15,328 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,904 by nannemdp
Tue, 2020-05-26 06:33
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
3,304 by smlewis
Mon, 2018-12-31 08:58
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
465 by Hyun
Tue, 2022-03-29 19:53
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
5,809 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,938 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,588 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protein docking
by LUOD » Thu, 2023-11-02 18:23
0
188 by LUOD
Thu, 2023-11-02 18:25
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,635 by mpacella
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
4,602 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
5,892 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
5,354 by weallen
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,958 by phanvy
Sun, 2014-06-22 23:29
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,479 by exchhattu
Mon, 2014-04-21 06:47
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
1,726 by matteoferla
Mon, 2022-01-10 06:44
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
2,148 by albumns
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
3,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
2,059 by orionshih
Tue, 2018-05-01 21:16
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,671 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
3,608 by smlewis
Mon, 2016-08-22 10:28
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
2,189 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
505 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
3,478 by phanvy
Wed, 2014-07-02 23:32
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
3,262 by rmoretti
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
2,227 by rmoretti
Mon, 2014-06-09 10:05
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,333 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
6,694 by rmoretti
Thu, 2016-02-04 09:29
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
6,461 by qlj
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
4,747 by smlewis
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
5,261 by zeynep
Mon, 2014-04-21 06:47
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
1,015 by LTJ
Mon, 2020-07-06 14:13
Normal topic Questions about gen_apo_grids
by JasonIsaac » Sat, 2023-06-17 00:20
0
279 by JasonIsaac
Sat, 2023-06-17 00:20
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
5,548 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
4,478 by dgront
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,674 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,542 by smlewis
Thu, 2018-06-28 13:34
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
789 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
4,176 by ctaylor
Mon, 2014-04-21 06:47
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,848 by SergeyP
Sun, 2015-12-20 01:44
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
3,288 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
4,633 by pardave
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,821 by Lati
Tue, 2016-01-12 13:28
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
2,093 by Lati
Fri, 2015-11-20 03:32
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,288 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
3,300 by smlewis
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34
19
16,105 by smlewis
Mon, 2014-04-21 06:47
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24
35
31,463 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
8,892 by rmoretti
Mon, 2015-06-01 15:27
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
54,447 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,378 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
2,356 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
6,355 by rmoretti
Mon, 2014-04-21 06:47
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
1,284 by hajar
Wed, 2020-06-10 11:17
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
2,057 by smlewis
Mon, 2014-04-21 06:47
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
1,278 by aloshbau
Tue, 2021-03-09 02:47
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
1,997 by rmoretti
Mon, 2018-08-20 11:51
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
3,004 by Lindsay
Mon, 2014-04-21 06:47
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04
2
1,887 by matteoferla
Thu, 2021-10-07 09:31
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
2,732 by smlewis
Wed, 2018-04-18 19:03
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
3,032 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
5,592 by rmoretti
Sat, 2015-04-25 10:05
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
2,967 by mintseris
Mon, 2014-04-21 06:47
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
3,272 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
1,510 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
4,413 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
4,880 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57
10
7,968 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
9,776 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Relax structure using Membrane Environment Scoring Function
by anna.duncan » Thu, 2010-02-04 08:01
6
7,884 by jruhym
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,812 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
0
1,030 by matteoferla
Fri, 2021-02-26 07:12
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,773 by possu
Tue, 2016-08-30 16:57
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
9,176 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic Renumbering PDB
by jgustat » Wed, 2022-07-27 13:37
2
895 by jgustat
Thu, 2022-07-28 10:00
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,340 by almeida85
Thu, 2022-08-11 00:29
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
2,076 by sheehajh
Thu, 2018-02-08 21:18
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
2,000 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Replacing a single residue in a structure
by Wexter300 » Sat, 2023-09-16 14:23
0
443 by Wexter300
Sat, 2023-09-16 14:23
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
2,478 by sdh_h
Thu, 2016-08-04 11:22
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,298 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic Reproducing Rosetta++ scoring function with Rosetta 3?
by JuliusSu » Mon, 2014-03-17 21:15
7
7,142 by JuliusSu
Wed, 2014-03-19 20:38
Normal topic rerun same experiment on MPI.
by exchhattu » Tue, 2010-02-23 21:14
7
6,946 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
4,074 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
3,035 by erin_cutts
Mon, 2014-04-21 06:48
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