You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
1 |
2,199 |
by smlewis Mon, 2014-04-21 06:47 |
|
Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
2 |
3,310 |
by jklett Mon, 2014-04-21 06:47 |
|
Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
4 |
6,159 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
|
Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
9 |
8,987 |
by ac.research Mon, 2018-05-14 10:20 |
|
problems with cluster program by umeshghosh » Thu, 2010-04-08 07:45 |
1 |
2,507 |
by smlewis Mon, 2014-04-21 06:47 |
|
Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
8 |
5,204 |
by helenah Tue, 2020-11-03 04:33 |
|
Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
5 |
4,465 |
by Loki01 Thu, 2017-12-14 06:20 |
|
Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
0 |
526 |
by liuwenxi Tue, 2022-08-09 08:33 |
|
problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
1,506 |
by connyyu Thu, 2019-04-18 03:26 |
|
Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
4,090 |
by rmoretti Wed, 2017-06-28 01:33 |
|
Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
1 |
2,159 |
by rmoretti Tue, 2016-07-12 08:43 |
|
problems with terminal caps by omirus » Tue, 2013-06-25 08:55 |
26 |
29,343 |
by omirus Mon, 2014-04-21 06:48 |
|
Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
5,415 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
|
Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
1 |
1,711 |
by vmulligan Sat, 2020-04-11 17:40 |
|
Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
2,719 |
by rmoretti Fri, 2018-08-03 08:42 |
|
Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
0 |
530 |
by cttm4a1 Wed, 2022-09-07 23:41 |
|
protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
0 |
699 |
by guowuchen Thu, 2022-06-23 04:43 |
|
protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
5,913 |
by jadolfbr Mon, 2014-04-21 07:30 |
|
protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
1 |
1,399 |
by rmoretti Tue, 2021-02-09 12:25 |
|
protein design question by bo » Fri, 2012-08-24 10:41 |
33 |
34,439 |
by jyy Wed, 2019-02-20 00:30 |
|
Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,334 |
by ac.research Fri, 2017-08-18 00:53 |
|
protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 |
51 |
60,767 |
by rmoretti Fri, 2015-07-03 13:29 |
|
Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
4,176 |
by rmoretti Mon, 2014-04-21 06:48 |
|
protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
16 |
15,795 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
1,990 |
by nannemdp Tue, 2020-05-26 06:33 |
|
protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
3,418 |
by smlewis Mon, 2018-12-31 08:58 |
|
protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
0 |
507 |
by Hyun Tue, 2022-03-29 19:53 |
|
protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
5,931 |
by smlewis Mon, 2014-04-21 06:47 |
|
protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
2,015 |
by dfcoelho Tue, 2019-11-19 10:16 |
|
protein-protein docking by LUOD » Thu, 2023-11-02 18:23 |
0 |
245 |
by LUOD Thu, 2023-11-02 18:25 |
|
Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
1 |
2,652 |
by smlewis Mon, 2014-04-21 06:47 |
|
protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
2,683 |
by mpacella Mon, 2014-04-21 06:47 |
|
protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
4,809 |
by jadolfbr Tue, 2019-04-16 09:15 |
|
pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
6,072 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
6 |
5,553 |
by weallen Mon, 2014-04-21 06:47 |
|
PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
3,035 |
by phanvy Sun, 2014-06-22 23:29 |
|
pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,518 |
by exchhattu Mon, 2014-04-21 06:47 |
|
pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
3 |
1,867 |
by matteoferla Mon, 2022-01-10 06:44 |
|
python problem? by albumns » Fri, 2012-03-02 11:03 |
1 |
2,196 |
by albumns Mon, 2014-04-21 06:47 |
|
Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
3 |
3,893 |
by smlewis Mon, 2014-04-21 06:47 |
|
Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
2 |
2,129 |
by orionshih Tue, 2018-05-01 21:16 |
|
Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
1 |
1,729 |
by rmoretti Wed, 2018-08-01 16:04 |
|
Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,713 |
by smlewis Mon, 2016-08-22 10:28 |
|
question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
1 |
2,229 |
by smlewis Mon, 2014-04-21 06:47 |
|
Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
0 |
540 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
|
Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
3,575 |
by phanvy Wed, 2014-07-02 23:32 |
|
question about scoring silent output files and their contents by burkheadlab » Wed, 2011-07-27 16:28 |
2 |
3,335 |
by rmoretti Mon, 2014-04-21 06:47 |
|
question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
1 |
2,283 |
by rmoretti Mon, 2014-06-09 10:05 |
|
Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
1 |
2,392 |
by rmoretti Mon, 2014-07-07 08:08 |
|
Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
7 |
6,872 |
by rmoretti Thu, 2016-02-04 09:29 |
|
Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
6,595 |
by qlj Mon, 2014-04-21 06:47 |
|
Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
4,862 |
by smlewis Mon, 2014-04-21 06:47 |
|
questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
5 |
5,421 |
by zeynep Mon, 2014-04-21 06:47 |
|
Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
0 |
1,057 |
by LTJ Mon, 2020-07-06 14:13 |
|
Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
0 |
332 |
by JasonIsaac Sat, 2023-06-17 00:20 |
|
Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,643 |
by smlewis Mon, 2014-04-21 06:47 |
|
Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
3 |
4,566 |
by dgront Mon, 2014-04-21 06:47 |
|
Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
2 |
2,752 |
by pachecoj Wed, 2014-10-15 15:12 |
|
Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
1 |
1,606 |
by smlewis Thu, 2018-06-28 13:34 |
|
Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
0 |
818 |
by pedro.guillem Thu, 2020-07-23 03:45 |
|
Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
2 |
4,296 |
by ctaylor Mon, 2014-04-21 06:47 |
|
rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,923 |
by SergeyP Sun, 2015-12-20 01:44 |
|
rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
1 |
3,361 |
by rmoretti Thu, 2015-12-03 15:14 |
|
Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
4 |
4,738 |
by pardave Mon, 2014-04-21 06:47 |
|
RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,907 |
by Lati Tue, 2016-01-12 13:28 |
|
RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
1 |
2,148 |
by Lati Fri, 2015-11-20 03:32 |
|
ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
1 |
2,349 |
by rmoretti Mon, 2014-12-15 02:37 |
|
Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
1 |
3,355 |
by smlewis Mon, 2014-04-21 06:47 |
|
RE: Loop Modeling and Beta-strand design by bharat_46010 » Sun, 2012-02-12 16:34 |
19 |
16,541 |
by smlewis Mon, 2014-04-21 06:47 |
|
Re: Multigraft by bharat_46010 » Wed, 2011-12-07 17:24 |
35 |
32,271 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
9 |
9,149 |
by rmoretti Mon, 2015-06-01 15:27 |
|
Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
55 |
55,594 |
by bharat_46010 Mon, 2014-04-21 06:47 |
|
Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,426 |
by smlewis Mon, 2014-04-21 06:47 |
|
Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
2 |
2,450 |
by Martin Floor Tue, 2018-08-28 13:21 |
|
Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,461 |
by rmoretti Mon, 2014-04-21 06:47 |
|
reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
1,340 |
by hajar Wed, 2020-06-10 11:17 |
|
rebuilding and refinement by exchhattu » Tue, 2009-10-06 21:13 |
1 |
2,129 |
by smlewis Mon, 2014-04-21 06:47 |
|
Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
1 |
1,345 |
by aloshbau Tue, 2021-03-09 02:47 |
|
recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
2,076 |
by rmoretti Mon, 2018-08-20 11:51 |
|
redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
2 |
3,073 |
by Lindsay Mon, 2014-04-21 06:47 |
|
ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
2 |
2,034 |
by matteoferla Thu, 2021-10-07 09:31 |
|
Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
3 |
2,834 |
by smlewis Wed, 2018-04-18 19:03 |
|
relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
3,136 |
by allan.ferrari Tue, 2017-01-03 05:02 |
|
Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
5 |
5,727 |
by rmoretti Sat, 2015-04-25 10:05 |
|
relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
2 |
3,031 |
by mintseris Mon, 2014-04-21 06:47 |
|
relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
3 |
3,361 |
by smlewis Mon, 2014-04-21 06:47 |
|
Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
1,584 |
by AJVincelli Sun, 2018-11-25 11:09 |
|
Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
4,525 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
5 |
5,023 |
by smlewis Mon, 2014-04-21 06:47 |
|
Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
10 |
8,196 |
by jiongzhang Mon, 2014-04-21 06:47 |
|
relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
7 |
9,993 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
6 |
8,070 |
by jruhym Mon, 2014-04-21 06:47 |
|
relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
2 |
2,888 |
by jtmacd Mon, 2014-04-21 06:47 |
|
Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
0 |
1,074 |
by matteoferla Fri, 2021-02-26 07:12 |
|
Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,830 |
by possu Tue, 2016-08-30 16:57 |
|
Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
10 |
9,405 |
by rfieldhouse Mon, 2014-04-21 06:47 |
|
Renumbering PDB by jgustat » Wed, 2022-07-27 13:37 |
2 |
997 |
by jgustat Thu, 2022-07-28 10:00 |
|
Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
4 |
1,458 |
by almeida85 Thu, 2022-08-11 00:29 |
|
Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
2 |
2,154 |
by sheehajh Thu, 2018-02-08 21:18 |
|
replace a short helix by berk » Wed, 2013-06-05 10:19 |
1 |
2,051 |
by rmoretti Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.