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Rosetta 3 - General

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Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,757 by rmoretti
Mon, 2016-11-14 14:26
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,755 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,753 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,750 by smlewis
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
1,749 by jalan
Sun, 2020-04-12 08:01
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,745 by Trentage
Mon, 2014-04-21 06:47
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
1,745 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,744 by smlewis
Mon, 2018-04-16 16:32
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,738 by smlewis
Tue, 2015-12-22 08:31
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,738 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,734 by rmoretti
Fri, 2015-07-03 13:51
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,731 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,729 by rmoretti
Wed, 2017-03-29 12:37
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
1,728 by nleroy
Fri, 2019-11-08 12:44
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,725 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,722 by smlewis
Sun, 2016-01-10 10:02
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,722 by smlewis
Mon, 2014-04-21 06:48
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,721 by smlewis
Sun, 2016-03-13 15:25
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
1,719 by orionshih
Tue, 2018-05-01 21:16
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,717 by rmoretti
Thu, 2015-08-06 09:28
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,712 by rmoretti
Sat, 2015-09-19 13:20
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,709 by smlewis
Mon, 2014-04-21 06:47
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,708 by joseph
Mon, 2014-04-21 06:47
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
1,703 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
1,703 by rmoretti
Mon, 2018-01-15 14:35
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,701 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,695 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
1,684 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
1,683 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
1,677 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,670 by jurkm
Mon, 2014-04-21 06:47
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
1,643 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,642 by vmulligan
Tue, 2019-03-26 11:30
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
1,641 by ylwang
Tue, 2020-03-24 19:35
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,640 by ylwang
Tue, 2019-10-08 18:34
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,639 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,638 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,634 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,631 by smlewis
Tue, 2018-06-19 10:31
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,630 by ssrb
Tue, 2016-07-12 10:02
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,630 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,611 by rmoretti
Wed, 2016-06-15 16:06
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,610 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,605 by smlewis
Wed, 2017-06-28 06:59
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,603 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,600 by rmoretti
Thu, 2016-04-28 14:47
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,583 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
1,578 by sgaray
Fri, 2021-06-25 11:26
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,577 by rmoretti
Thu, 2016-09-08 07:56
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,575 by rmoretti
Sat, 2017-12-02 10:22
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
1,574 by rmoretti
Fri, 2018-08-03 08:59
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,573 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,572 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,569 by smlewis
Mon, 2016-08-22 10:39
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
1,567 by ac.research
Fri, 2020-02-14 23:33
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,566 by David
Tue, 2019-01-22 12:23
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,565 by matteoferla
Wed, 2019-08-21 11:58
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,564 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
0
1,558 by w107kdk
Mon, 2014-04-21 06:47
Normal topic clean_pdb.py
by duz » Wed, 2021-03-24 13:36
2
1,554 by duz
Thu, 2021-04-01 09:34
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,550 by Karol
Mon, 2016-08-29 05:27
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,543 by rmoretti
Tue, 2016-07-12 08:48
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,539 by possu
Tue, 2016-08-30 16:57
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,537 by abdullah
Mon, 2014-04-21 06:47
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,534 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,531 by rmoretti
Thu, 2016-04-28 15:57
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
3
1,526 by Brian Wiley
Sat, 2023-02-04 23:26
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
1,525 by exchhattu
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,525 by DanielK
Mon, 2014-04-21 06:47
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,524 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Rosetta (antibody_designer) performance
by Kihang _Youn » Wed, 2022-03-02 00:48
7
1,522 by Kihang _Youn
Thu, 2022-03-10 16:30
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
1,520 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,517 by smlewis
Wed, 2017-03-22 14:02
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,515 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
1,515 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,512 by jalan
Thu, 2020-04-23 05:19
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,510 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,507 by rmoretti
Tue, 2019-07-09 12:31
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,484 by smlewis
Wed, 2016-08-24 07:23
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,483 by matteoferla
Thu, 2018-09-13 06:21
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,482 by rmoretti
Tue, 2021-02-09 13:45
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,481 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,476 by rmoretti
Mon, 2018-02-05 15:44
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,470 by DanielK
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,457 by rmoretti
Wed, 2017-09-06 08:47
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
1,450 by abhishek
Mon, 2014-04-21 06:47
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,441 by myang
Mon, 2014-04-21 06:47
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,438 by bjharris
Wed, 2020-09-09 20:04
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,435 by vasek
Mon, 2014-04-21 06:48
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,434 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,434 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
0
1,428 by sdh
Mon, 2014-04-21 06:47
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
1,426 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,423 by rmoretti
Tue, 2019-07-09 15:57
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
1,423 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,422 by rmoretti
Tue, 2017-03-28 09:02
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,419 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,414 by j.schmue
Tue, 2020-01-28 13:31
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,413 by tevang
Mon, 2014-04-21 06:47
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,412 by jadolfbr
Sun, 2020-05-03 19:38
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