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Rosetta 3 - General
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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1,500 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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1,498 |
by smlewis Sun, 2016-03-13 15:25 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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1,497 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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1,496 |
by smlewis Mon, 2018-04-16 16:32 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
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1,493 |
by rmoretti Thu, 2015-08-06 09:28 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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1,492 |
by rmoretti Tue, 2015-10-27 08:46 |
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Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
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1,490 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,486 |
by anirbanzz Mon, 2014-04-21 06:47 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
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1,482 |
by ylwang Sat, 2019-11-23 06:26 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
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1,481 |
by jadolfbr Wed, 2017-11-01 10:11 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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1,478 |
by matteoferla Thu, 2020-05-14 07:01 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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1,477 |
by smlewis Sun, 2016-01-10 10:02 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
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1,473 |
by rmoretti Sat, 2015-09-19 13:20 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
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1,463 |
by sheehajh Thu, 2018-02-08 21:18 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
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1,457 |
by rmoretti Wed, 2017-03-29 12:37 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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1,450 |
by everyday847 Mon, 2021-03-29 20:19 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
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1,446 |
by smlewis Wed, 2019-12-04 13:07 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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1,418 |
by orionshih Tue, 2018-05-01 21:16 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
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1,415 |
by ssrb Tue, 2016-07-12 10:02 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,414 |
by jadolfbr Fri, 2016-02-05 15:32 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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1,402 |
by jalan Sun, 2020-04-12 08:01 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
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1,395 |
by rmoretti Mon, 2018-01-15 14:35 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
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1,394 |
by rmoretti Tue, 2016-07-12 08:40 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,394 |
by w107kdk Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,391 |
by abdullah Mon, 2014-04-21 06:47 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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1,376 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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1,372 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
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1,366 |
by rmoretti Wed, 2016-06-29 10:20 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,365 |
by Karol Mon, 2016-08-29 05:27 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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1,362 |
by rmoretti Mon, 2018-08-20 11:51 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
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1,361 |
by rmoretti Thu, 2016-04-28 14:47 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
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1,361 |
by smlewis Wed, 2017-06-28 06:59 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
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1,358 |
by rmoretti Wed, 2016-06-15 16:06 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
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1,355 |
by rmoretti Thu, 2016-09-08 07:56 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,353 |
by DanielK Mon, 2014-04-21 06:47 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
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1,343 |
by smlewis Mon, 2016-08-22 10:39 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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1,339 |
by rmoretti Fri, 2019-03-29 14:43 |
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Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
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1,337 |
by rmoretti Thu, 2017-02-02 08:52 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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1,337 |
by ylwang Tue, 2019-10-08 18:34 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
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1,326 |
by rmoretti Sat, 2017-12-02 10:22 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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1,325 |
by nleroy Fri, 2019-11-08 12:44 |
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Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
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1,321 |
by rmoretti Thu, 2016-04-28 15:57 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
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1,317 |
by possu Tue, 2016-08-30 16:57 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,316 |
by exchhattu Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,313 |
by DanielK Mon, 2014-04-21 06:47 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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1,310 |
by rmoretti Tue, 2016-07-12 08:48 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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1,310 |
by matteoferla Wed, 2020-01-29 12:18 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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1,302 |
by rmoretti Mon, 2017-03-06 08:37 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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1,298 |
by smlewis Tue, 2018-06-19 10:31 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,296 |
by vasek Mon, 2014-04-21 06:48 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,295 |
by abhishek Mon, 2014-04-21 06:47 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
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1,294 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
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1,294 |
by vmulligan Tue, 2019-03-26 11:30 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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1,285 |
by rmoretti Fri, 2018-08-03 08:59 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,284 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
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1,283 |
by rmoretti Fri, 2017-09-08 15:15 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
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1,279 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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1,278 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,278 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
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1,276 |
by smlewis Wed, 2017-03-22 14:02 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
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1,275 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,274 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,269 |
by myang Mon, 2014-04-21 06:47 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,268 |
by tevang Mon, 2014-04-21 06:47 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
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1,267 |
by rmoretti Wed, 2019-04-03 09:58 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
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1,266 |
by sdh Mon, 2014-04-21 06:47 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,262 |
by ylwang Tue, 2020-03-24 19:35 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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1,258 |
by G Mustafa Tue, 2020-01-21 06:04 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
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1,254 |
by smlewis Wed, 2016-08-24 07:23 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,246 |
by justin Mon, 2014-04-21 06:47 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
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1,238 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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1,236 |
by dfcoelho Tue, 2019-11-19 10:16 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
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1,234 |
by matteoferla Wed, 2019-08-21 11:58 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
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1,233 |
by everyday847 Thu, 2021-04-01 11:59 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,232 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,225 |
by albumns Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,225 |
by gobli033 Mon, 2014-04-21 06:47 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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1,221 |
by matteoferla Thu, 2018-09-13 06:21 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,215 |
by IgaK Mon, 2014-04-21 06:47 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
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1,214 |
by rmoretti Mon, 2018-02-05 15:44 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
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1,213 |
by rmoretti Tue, 2017-03-28 09:02 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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1,212 |
by ac.research Fri, 2020-02-14 23:33 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,209 |
by ctaylor Mon, 2014-04-21 06:47 |
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
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1,206 |
by rmoretti Tue, 2021-02-09 09:22 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,204 |
by justin Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,204 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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1,202 |
by rmoretti Wed, 2017-09-06 08:47 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,202 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
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1,197 |
by rmoretti Tue, 2018-01-30 08:29 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,191 |
by exchhattu Mon, 2014-04-21 06:47 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,189 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,184 |
by lanselibai Sun, 2014-11-16 10:44 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,178 |
by rmoretti Tue, 2019-07-09 12:31 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
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1,169 |
by nannemdp Tue, 2020-05-26 06:33 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,164 |
by tricia Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
1,164 |
by David Tue, 2019-01-22 12:23 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
1 |
1,162 |
by jkleman Sat, 2018-04-14 10:55 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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1,162 |
by jyy Mon, 2020-01-13 17:19 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,153 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,151 |
by DanielK Mon, 2014-04-21 06:47 |
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