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Rosetta 3 - General
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Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
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1,757 |
by rmoretti Mon, 2016-11-14 14:26 |
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symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
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1,755 |
by rmoretti Tue, 2016-09-13 07:41 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
1,753 |
by rmoretti Mon, 2014-04-21 06:47 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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1,750 |
by smlewis Mon, 2014-04-21 06:47 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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1,749 |
by jalan Sun, 2020-04-12 08:01 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,745 |
by Trentage Mon, 2014-04-21 06:47 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
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1,745 |
by jadolfbr Wed, 2017-11-01 10:11 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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1,744 |
by smlewis Mon, 2018-04-16 16:32 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
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1,738 |
by smlewis Tue, 2015-12-22 08:31 |
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scoring function changed from 2.3? by jarod » Mon, 2010-04-12 18:56 |
1 |
1,738 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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1,734 |
by rmoretti Fri, 2015-07-03 13:51 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
1 |
1,731 |
by rmoretti Tue, 2015-10-27 08:46 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
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1,729 |
by rmoretti Wed, 2017-03-29 12:37 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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1,728 |
by nleroy Fri, 2019-11-08 12:44 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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1,725 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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1,722 |
by smlewis Sun, 2016-01-10 10:02 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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1,722 |
by smlewis Mon, 2014-04-21 06:48 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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1,721 |
by smlewis Sun, 2016-03-13 15:25 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
2 |
1,719 |
by orionshih Tue, 2018-05-01 21:16 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
1 |
1,717 |
by rmoretti Thu, 2015-08-06 09:28 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
1 |
1,712 |
by rmoretti Sat, 2015-09-19 13:20 |
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
1 |
1,709 |
by smlewis Mon, 2014-04-21 06:47 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,708 |
by joseph Mon, 2014-04-21 06:47 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
2 |
1,703 |
by rmoretti Fri, 2019-03-29 14:43 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
1,703 |
by rmoretti Mon, 2018-01-15 14:35 |
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new installation on local computer problem by lqzhang » Mon, 2010-02-01 08:41 |
1 |
1,701 |
by smlewis Mon, 2014-04-21 06:47 |
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Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
1 |
1,695 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
2 |
1,684 |
by G Mustafa Tue, 2020-01-21 06:04 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
2 |
1,683 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
1,677 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,670 |
by jurkm Mon, 2014-04-21 06:47 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
1,643 |
by rmoretti Mon, 2018-08-20 11:51 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
1 |
1,642 |
by vmulligan Tue, 2019-03-26 11:30 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
1,641 |
by ylwang Tue, 2020-03-24 19:35 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
2 |
1,640 |
by ylwang Tue, 2019-10-08 18:34 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
0 |
1,639 |
by anirbanzz Mon, 2014-04-21 06:47 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
1 |
1,638 |
by jadolfbr Fri, 2016-02-05 15:32 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
1,634 |
by rmoretti Wed, 2019-04-03 09:58 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
1 |
1,631 |
by smlewis Tue, 2018-06-19 10:31 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
1,630 |
by ssrb Tue, 2016-07-12 10:02 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,630 |
by rmoretti Tue, 2016-07-12 08:40 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
1 |
1,611 |
by rmoretti Wed, 2016-06-15 16:06 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,610 |
by rmoretti Wed, 2016-06-29 10:20 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
1 |
1,605 |
by smlewis Wed, 2017-06-28 06:59 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
1,603 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
1 |
1,600 |
by rmoretti Thu, 2016-04-28 14:47 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
1,583 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
1,578 |
by sgaray Fri, 2021-06-25 11:26 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,577 |
by rmoretti Thu, 2016-09-08 07:56 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,575 |
by rmoretti Sat, 2017-12-02 10:22 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
1 |
1,574 |
by rmoretti Fri, 2018-08-03 08:59 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
1 |
1,573 |
by rmoretti Mon, 2017-03-06 08:37 |
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Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
1 |
1,572 |
by rmoretti Thu, 2017-02-02 08:52 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,569 |
by smlewis Mon, 2016-08-22 10:39 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
2 |
1,567 |
by ac.research Fri, 2020-02-14 23:33 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
1,566 |
by David Tue, 2019-01-22 12:23 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,565 |
by matteoferla Wed, 2019-08-21 11:58 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
1,564 |
by dfcoelho Tue, 2019-11-19 10:16 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
0 |
1,558 |
by w107kdk Mon, 2014-04-21 06:47 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
1,554 |
by duz Thu, 2021-04-01 09:34 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,550 |
by Karol Mon, 2016-08-29 05:27 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,543 |
by rmoretti Tue, 2016-07-12 08:48 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,539 |
by possu Tue, 2016-08-30 16:57 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,537 |
by abdullah Mon, 2014-04-21 06:47 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
1,534 |
by rmoretti Wed, 2019-04-03 09:31 |
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Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,531 |
by rmoretti Thu, 2016-04-28 15:57 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
3 |
1,526 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
0 |
1,525 |
by exchhattu Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,525 |
by DanielK Mon, 2014-04-21 06:47 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
1,524 |
by nannemdp Tue, 2020-05-26 06:33 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
7 |
1,522 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
2 |
1,520 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,517 |
by smlewis Wed, 2017-03-22 14:02 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,515 |
by rmoretti Fri, 2017-09-08 15:15 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
1 |
1,515 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,512 |
by jalan Thu, 2020-04-23 05:19 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
1,510 |
by rlwoltz Wed, 2021-03-24 22:36 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
1 |
1,507 |
by rmoretti Tue, 2019-07-09 12:31 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,484 |
by smlewis Wed, 2016-08-24 07:23 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
1 |
1,483 |
by matteoferla Thu, 2018-09-13 06:21 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,482 |
by rmoretti Tue, 2021-02-09 13:45 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
1 |
1,481 |
by rmoretti Fri, 2020-11-13 12:58 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
1 |
1,476 |
by rmoretti Mon, 2018-02-05 15:44 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,470 |
by DanielK Mon, 2014-04-21 06:47 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,457 |
by rmoretti Wed, 2017-09-06 08:47 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
0 |
1,450 |
by abhishek Mon, 2014-04-21 06:47 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
0 |
1,441 |
by myang Mon, 2014-04-21 06:47 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,438 |
by bjharris Wed, 2020-09-09 20:04 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,435 |
by vasek Mon, 2014-04-21 06:48 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,434 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
1,434 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,428 |
by sdh Mon, 2014-04-21 06:47 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
0 |
1,426 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
1,423 |
by rmoretti Tue, 2019-07-09 15:57 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
2 |
1,423 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,422 |
by rmoretti Tue, 2017-03-28 09:02 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
1 |
1,419 |
by rmoretti Tue, 2018-01-30 08:29 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,414 |
by j.schmue Tue, 2020-01-28 13:31 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,413 |
by tevang Mon, 2014-04-21 06:47 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
1 |
1,412 |
by jadolfbr Sun, 2020-05-03 19:38 |
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