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Rosetta 3 - General

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
1,500 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,498 by smlewis
Sun, 2016-03-13 15:25
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,497 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,496 by smlewis
Mon, 2018-04-16 16:32
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,493 by rmoretti
Thu, 2015-08-06 09:28
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,492 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,490 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,486 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
1,482 by ylwang
Sat, 2019-11-23 06:26
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
1,481 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
1,478 by matteoferla
Thu, 2020-05-14 07:01
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,477 by smlewis
Sun, 2016-01-10 10:02
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,473 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
1,463 by sheehajh
Thu, 2018-02-08 21:18
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,457 by rmoretti
Wed, 2017-03-29 12:37
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
1,450 by everyday847
Mon, 2021-03-29 20:19
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
1,446 by smlewis
Wed, 2019-12-04 13:07
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
1,418 by orionshih
Tue, 2018-05-01 21:16
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,415 by ssrb
Tue, 2016-07-12 10:02
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,414 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
1,402 by jalan
Sun, 2020-04-12 08:01
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
1,395 by rmoretti
Mon, 2018-01-15 14:35
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,394 by rmoretti
Tue, 2016-07-12 08:40
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
0
1,394 by w107kdk
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,391 by abdullah
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
1,376 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
1,372 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,366 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,365 by Karol
Mon, 2016-08-29 05:27
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
1,362 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,361 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,361 by smlewis
Wed, 2017-06-28 06:59
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,358 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,355 by rmoretti
Thu, 2016-09-08 07:56
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,353 by DanielK
Mon, 2014-04-21 06:47
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,343 by smlewis
Mon, 2016-08-22 10:39
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
1,339 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,337 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,337 by ylwang
Tue, 2019-10-08 18:34
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,326 by rmoretti
Sat, 2017-12-02 10:22
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
1,325 by nleroy
Fri, 2019-11-08 12:44
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,321 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,317 by possu
Tue, 2016-08-30 16:57
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
1,316 by exchhattu
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,313 by DanielK
Mon, 2014-04-21 06:47
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,310 by rmoretti
Tue, 2016-07-12 08:48
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
1,310 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,302 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,298 by smlewis
Tue, 2018-06-19 10:31
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,296 by vasek
Mon, 2014-04-21 06:48
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
1,295 by abhishek
Mon, 2014-04-21 06:47
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
1,294 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,294 by vmulligan
Tue, 2019-03-26 11:30
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
1,285 by rmoretti
Fri, 2018-08-03 08:59
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
1,284 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,283 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,279 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
1,278 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,278 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,276 by smlewis
Wed, 2017-03-22 14:02
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,275 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
1,274 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,269 by myang
Mon, 2014-04-21 06:47
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,268 by tevang
Mon, 2014-04-21 06:47
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,267 by rmoretti
Wed, 2019-04-03 09:58
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
0
1,266 by sdh
Mon, 2014-04-21 06:47
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
1,262 by ylwang
Tue, 2020-03-24 19:35
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
1,258 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,254 by smlewis
Wed, 2016-08-24 07:23
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
1,246 by justin
Mon, 2014-04-21 06:47
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,238 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,236 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,234 by matteoferla
Wed, 2019-08-21 11:58
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
1,233 by everyday847
Thu, 2021-04-01 11:59
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
1,232 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
0
1,225 by albumns
Mon, 2014-04-21 06:47
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
0
1,225 by gobli033
Mon, 2014-04-21 06:47
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,221 by matteoferla
Thu, 2018-09-13 06:21
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,215 by IgaK
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,214 by rmoretti
Mon, 2018-02-05 15:44
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,213 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
1,212 by ac.research
Fri, 2020-02-14 23:33
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
1,209 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
1,206 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
1,204 by justin
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,204 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,202 by rmoretti
Wed, 2017-09-06 08:47
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,202 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,197 by rmoretti
Tue, 2018-01-30 08:29
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,191 by exchhattu
Mon, 2014-04-21 06:47
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
1,189 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,184 by lanselibai
Sun, 2014-11-16 10:44
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,178 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,169 by nannemdp
Tue, 2020-05-26 06:33
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
1,164 by tricia
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,164 by David
Tue, 2019-01-22 12:23
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,162 by jkleman
Sat, 2018-04-14 10:55
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,162 by jyy
Mon, 2020-01-13 17:19
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,153 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,151 by DanielK
Mon, 2014-04-21 06:47
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