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Rosetta 3 - General
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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1,578 |
by ylwang Tue, 2019-10-08 18:34 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
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3,627 |
by ltrabuco Mon, 2014-04-21 06:47 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,327 |
by exchhattu Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
2,906 |
by scombs Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
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2,440 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
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2,153 |
by vmulligan Thu, 2017-04-27 16:41 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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2,417 |
by asbelx Thu, 2018-04-26 00:23 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,254 |
by Smbat Thu, 2020-07-30 03:07 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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847 |
by ericlang Mon, 2021-07-05 06:59 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,160 |
by smlewis Mon, 2014-04-21 06:47 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
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2,182 |
by Karol Thu, 2016-05-12 07:58 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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1,692 |
by jalan Sun, 2020-04-12 08:01 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
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2,875 |
by jadolfbr Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
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2,829 |
by smlewis Thu, 2016-01-14 08:19 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
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1,442 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
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3,138 |
by phanvy Mon, 2014-04-21 03:58 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
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2,594 |
by renedominik Sat, 2018-07-07 03:03 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
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1,205 |
by JW_24 Wed, 2020-09-23 01:27 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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889 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
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3,055 |
by jos Mon, 2014-04-21 06:47 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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1,588 |
by G Mustafa Tue, 2020-01-21 06:04 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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597 |
by LanMei Tue, 2022-03-22 20:45 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
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3,834 |
by jtmacd Mon, 2014-04-21 06:47 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
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1,903 |
by benhardy Fri, 2021-05-07 07:22 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
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5,748 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
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5,251 |
by syoifczeri Mon, 2015-11-02 03:59 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
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1,264 |
by szcshr123 Fri, 2021-02-26 14:41 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
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2,262 |
by biofisikx Mon, 2014-04-21 06:47 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
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2,297 |
by rmoretti Mon, 2014-04-21 06:47 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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2,725 |
by petrikigor Mon, 2014-04-21 06:47 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
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3,894 |
by aneamtu Thu, 2018-01-18 00:56 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
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1,429 |
by rlwoltz Wed, 2021-03-24 22:36 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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881 |
by hong wei Thu, 2021-11-25 02:46 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
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278 |
by brubin Tue, 2022-12-20 13:26 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
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3,137 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
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2,558 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
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3,294 |
by smlewis Mon, 2014-04-21 06:47 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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2,795 |
by Trentage Mon, 2014-04-21 06:47 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
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848 |
by lanselibai Thu, 2021-06-24 10:16 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
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2,615 |
by lvtun Mon, 2014-04-21 06:47 |
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Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
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3,562 |
by rmoretti Mon, 2014-04-21 06:47 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
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2,319 |
by pachecoj Wed, 2014-10-15 15:12 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
2,973 |
by jrcf Fri, 2016-02-12 16:41 |
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reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
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2,102 |
by sdh_h Thu, 2016-08-04 11:22 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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2,203 |
by smlewis Mon, 2014-04-21 06:47 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
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9,266 |
by Lindsay Mon, 2014-04-21 06:47 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
2 |
1,615 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
2 |
3,241 |
by biofisikx Mon, 2014-04-21 06:47 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,492 |
by abiadak Mon, 2014-04-21 06:47 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
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2,434 |
by straore Fri, 2015-04-17 01:54 |
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Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
2,596 |
by jhbrown Mon, 2014-04-21 06:47 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,282 |
by aaj Mon, 2016-02-22 07:50 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
2,593 |
by phanvy Sun, 2014-06-22 23:29 |
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Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
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2,515 |
by rmoretti Tue, 2015-08-18 17:11 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
2,237 |
by ndousis Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
2,929 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,492 |
by matteoferla Wed, 2019-08-21 11:58 |
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Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
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2,432 |
by monteirotorres Mon, 2014-04-21 06:47 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
2,194 |
by exchhattu Mon, 2014-04-21 06:47 |
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Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
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2,744 |
by jrcf Tue, 2016-05-03 17:40 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,526 |
by rmoretti Mon, 2014-04-21 06:47 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
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3,277 |
by jrcf Fri, 2015-10-16 10:57 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
2 |
947 |
by guowuchen Wed, 2022-03-30 04:20 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
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2,933 |
by vsjasion Mon, 2014-04-21 06:47 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,332 |
by jarek Mon, 2014-04-21 06:48 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,345 |
by road runner Tue, 2015-12-01 10:08 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
2 |
3,016 |
by vanita Mon, 2014-04-21 06:47 |
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
2 |
2,707 |
by aminzia Fri, 2019-07-26 13:14 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
2 |
2,872 |
by gw Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
2 |
2,731 |
by Anatol Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
2 |
5,091 |
by Apiwat Sat, 2014-02-08 01:41 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,091 |
by aloshbau Mon, 2015-12-14 23:30 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,444 |
by jalan Thu, 2020-04-23 05:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
975 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
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454 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,333 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,167 |
by jhbrown Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,166 |
by inder Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
4,791 |
by Ashafix Wed, 2014-02-19 06:53 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
3,723 |
by rmoretti Wed, 2015-01-21 10:05 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
1,836 |
by MA Thu, 2017-04-27 18:53 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
2 |
3,390 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
1,950 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,228 |
by smlewis Mon, 2014-04-21 06:47 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,759 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,532 |
by rmoretti Thu, 2015-08-06 09:21 |
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build parallel version of Rosetta by atfrank » Tue, 2009-10-06 22:33 |
2 |
3,343 |
by smlewis Mon, 2014-04-21 06:47 |
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Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,240 |
by Matthys Mon, 2014-04-21 06:47 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,388 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,512 |
by Apiwat Thu, 2014-04-17 09:56 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
2 |
3,132 |
by Awagner7 Tue, 2020-04-28 10:51 |
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possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
2 |
2,354 |
by jtmacd Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
2,740 |
by alejandro Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,783 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,100 |
by aloshbau Sun, 2016-02-14 20:14 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,022 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,206 |
by kbuhr Tue, 2015-07-14 04:30 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,593 |
by smlewis Mon, 2014-04-21 06:47 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,610 |
by MRH Mon, 2014-04-21 06:48 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,344 |
by j.schmue Tue, 2020-01-28 13:31 |
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