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Rosetta 3 - General
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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1,640 |
by matteoferla Mon, 2021-07-12 02:23 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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3,151 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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3,086 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
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2,923 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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2,872 |
by jadolfbr Sun, 2016-12-11 10:53 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
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2,338 |
by duz Thu, 2021-04-01 09:34 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
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2,888 |
by jtmacd Mon, 2014-04-21 06:47 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
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2,918 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
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2,740 |
by smlewis Sun, 2017-01-15 18:10 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
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2,982 |
by ctaylor Mon, 2014-04-21 06:47 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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3,118 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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2,076 |
by rmoretti Mon, 2018-08-20 11:51 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
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2,566 |
by smlewis Wed, 2019-12-04 13:07 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
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3,234 |
by pledor Mon, 2014-04-21 06:47 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
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3,937 |
by mansi Mon, 2014-04-21 06:47 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
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2,559 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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1,952 |
by rmoretti Tue, 2021-02-09 13:45 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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879 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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2,766 |
by ytao Mon, 2014-04-21 06:47 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
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438 |
by Yair Tenorio Mon, 2023-10-23 12:29 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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2,367 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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2,400 |
by matteoferla Wed, 2020-01-29 12:18 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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1,600 |
by amystevens Thu, 2021-09-30 14:18 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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1,229 |
by rjacak Thu, 2022-03-31 10:53 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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4,519 |
by knutjbj Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
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2,800 |
by banshee Mon, 2014-04-21 06:48 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
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2,687 |
by mmarlett Thu, 2016-06-16 07:06 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
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2,492 |
by matteoferla Thu, 2019-08-22 05:39 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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3,627 |
by szypanther Mon, 2014-05-26 22:03 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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2,374 |
by CameronJA Wed, 2022-01-19 20:50 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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3,115 |
by wangyr Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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3,114 |
by Lindsay Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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3,056 |
by Run Mon, 2014-04-21 06:48 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
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3,310 |
by jklett Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
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4,003 |
by varma Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,659 |
by SergeyP Sat, 2015-12-19 05:20 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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2,626 |
by msardejani Wed, 2016-10-05 10:53 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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2,096 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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2,014 |
by dfcoelho Tue, 2019-11-19 10:16 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,702 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
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2,891 |
by Lindsay Mon, 2014-04-21 06:47 |
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Cluster Error by justin » Mon, 2010-04-26 00:06 |
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2,953 |
by justin Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
5,157 |
by pepfolder Mon, 2014-04-21 06:47 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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2,790 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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2,854 |
by barak Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
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2,843 |
by doranhen Mon, 2014-04-21 06:47 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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3,052 |
by pachecoj Thu, 2014-10-09 18:15 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
2,121 |
by rmoretti Mon, 2018-01-15 14:35 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
2 |
2,746 |
by exchhattu Mon, 2014-04-21 06:47 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
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2,936 |
by jarod Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,592 |
by smlewis Mon, 2014-04-21 06:47 |
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Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
3,041 |
by zdn3023 Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
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3,203 |
by doranhen Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
4,720 |
by Lindsay Mon, 2014-04-21 06:48 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
4,665 |
by phanvy Thu, 2014-10-16 18:54 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
2 |
2,154 |
by sheehajh Thu, 2018-02-08 21:18 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
2,033 |
by rmoretti Wed, 2019-04-03 09:58 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
2 |
1,703 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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990 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
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2,895 |
by pachecoj Tue, 2014-11-11 19:30 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
2,048 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Output and Input Tutorial by jgustat » Fri, 2022-07-01 13:07 |
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1,036 |
by jgustat Fri, 2022-07-01 13:26 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
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3,072 |
by dave Mon, 2014-04-21 06:47 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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2,303 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
4,980 |
by rmoretti Mon, 2014-04-21 06:47 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
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4,414 |
by Apiwat Thu, 2014-04-17 09:56 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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3,522 |
by rmoretti Thu, 2018-06-28 14:09 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
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1,826 |
by bjharris Wed, 2020-09-09 20:04 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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1,462 |
by patcD Wed, 2021-09-01 06:54 |
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pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
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932 |
by Liviu Copoiu Tue, 2022-11-08 10:43 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
5,722 |
by jwillis Sat, 2015-06-27 21:11 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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3,732 |
by cossio Wed, 2014-12-03 14:51 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
2,720 |
by SergeyP Fri, 2017-03-10 11:16 |
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FARFAR2 Error With Secondary Structure File by bdh81 » Thu, 2023-11-02 09:01 |
2 |
457 |
by bdh81 Sun, 2023-11-05 16:04 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
2 |
2,753 |
by gerdos Fri, 2015-10-16 03:01 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
2 |
2,064 |
by ac.research Fri, 2020-02-14 23:33 |
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RuntimeError: CUDA out of memory. by ravi.thakkar » Tue, 2023-03-07 00:27 |
2 |
805 |
by rmoretti Tue, 2023-03-07 08:18 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,716 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,873 |
by berk Mon, 2014-04-21 06:48 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
2 |
3,147 |
by pitmand Tue, 2015-05-26 12:20 |
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Rigid Body & Flexible Minimization by Hanieh » Thu, 2014-02-06 12:37 |
2 |
3,988 |
by Hanieh Fri, 2014-02-28 12:43 |
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Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
4,420 |
by mgrom92 Wed, 2016-03-23 16:45 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
2 |
1,040 |
by Ken Wed, 2022-08-17 08:04 |
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Rosetta numbering with missing occupancies by ShaneOConnor » Fri, 2011-10-07 16:18 |
2 |
3,601 |
by ShaneOConnor Mon, 2014-04-21 06:47 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,907 |
by Lati Tue, 2016-01-12 13:28 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
2 |
2,603 |
by brspurri Thu, 2020-08-20 13:22 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
2 |
3,724 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
2 |
2,025 |
by ylwang Tue, 2019-10-08 18:34 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
4,131 |
by ltrabuco Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,785 |
by scombs Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,889 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
2,652 |
by vmulligan Thu, 2017-04-27 16:41 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
2 |
3,258 |
by asbelx Thu, 2018-04-26 00:23 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
2 |
1,709 |
by Smbat Thu, 2020-07-30 03:07 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
2 |
1,301 |
by ericlang Mon, 2021-07-05 06:59 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
2 |
3,586 |
by smlewis Mon, 2014-04-21 06:47 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
3,084 |
by kalabharath Mon, 2014-04-21 06:47 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
2 |
2,770 |
by htorres Mon, 2018-02-05 06:53 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
1,578 |
by pci112 Thu, 2021-03-25 01:44 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
3,362 |
by smlewis Thu, 2016-01-14 08:19 |
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