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Rosetta 3 - General

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Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,578 by ylwang
Tue, 2019-10-08 18:34
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,627 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,327 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
2,906 by scombs
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
2,440 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
2,153 by vmulligan
Thu, 2017-04-27 16:41
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
2,417 by asbelx
Thu, 2018-04-26 00:23
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
1,254 by Smbat
Thu, 2020-07-30 03:07
Normal topic Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal?
by ericlang » Mon, 2021-07-05 05:43
2
847 by ericlang
Mon, 2021-07-05 06:59
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
2,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
2,182 by Karol
Thu, 2016-05-12 07:58
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
1,692 by jalan
Sun, 2020-04-12 08:01
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
2,875 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
2,829 by smlewis
Thu, 2016-01-14 08:19
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
1,442 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
3,138 by phanvy
Mon, 2014-04-21 03:58
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
2,594 by renedominik
Sat, 2018-07-07 03:03
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
1,205 by JW_24
Wed, 2020-09-23 01:27
Normal topic Help deciphering an input
by Elijah_Hix » Wed, 2021-09-22 11:12
2
889 by Elijah_Hix
Thu, 2021-09-23 10:13
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
3,055 by jos
Mon, 2014-04-21 06:47
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
1,588 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
597 by LanMei
Tue, 2022-03-22 20:45
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
3,834 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
1,903 by benhardy
Fri, 2021-05-07 07:22
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
5,748 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
5,251 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,264 by szcshr123
Fri, 2021-02-26 14:41
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
2,262 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,297 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
2,725 by petrikigor
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
3,894 by aneamtu
Thu, 2018-01-18 00:56
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,429 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
881 by hong wei
Thu, 2021-11-25 02:46
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
278 by brubin
Tue, 2022-12-20 13:26
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
3,137 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
2,558 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
3,294 by smlewis
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
2,795 by Trentage
Mon, 2014-04-21 06:47
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
848 by lanselibai
Thu, 2021-06-24 10:16
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
2,615 by lvtun
Mon, 2014-04-21 06:47
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
3,562 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,319 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
2,973 by jrcf
Fri, 2016-02-12 16:41
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
2,102 by sdh_h
Thu, 2016-08-04 11:22
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
2,203 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
9,266 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
1,615 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
3,241 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
3,492 by abiadak
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,434 by straore
Fri, 2015-04-17 01:54
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,596 by jhbrown
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,282 by aaj
Mon, 2016-02-22 07:50
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,593 by phanvy
Sun, 2014-06-22 23:29
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,515 by rmoretti
Tue, 2015-08-18 17:11
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
2,237 by ndousis
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
2,929 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,492 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,432 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
2,194 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,744 by jrcf
Tue, 2016-05-03 17:40
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
3,526 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,277 by jrcf
Fri, 2015-10-16 10:57
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
947 by guowuchen
Wed, 2022-03-30 04:20
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,933 by vsjasion
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,332 by jarek
Mon, 2014-04-21 06:48
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,345 by road runner
Tue, 2015-12-01 10:08
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
3,016 by vanita
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
2,707 by aminzia
Fri, 2019-07-26 13:14
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,872 by gw
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
2,731 by Anatol
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
5,091 by Apiwat
Sat, 2014-02-08 01:41
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,091 by aloshbau
Mon, 2015-12-14 23:30
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,444 by jalan
Thu, 2020-04-23 05:19
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
975 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
454 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,167 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,166 by inder
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,791 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,723 by rmoretti
Wed, 2015-01-21 10:05
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,836 by MA
Thu, 2017-04-27 18:53
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
3,390 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
1,950 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,759 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,532 by rmoretti
Thu, 2015-08-06 09:21
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
3,343 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
3,240 by Matthys
Mon, 2014-04-21 06:47
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,388 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
2,512 by Apiwat
Thu, 2014-04-17 09:56
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
3,132 by Awagner7
Tue, 2020-04-28 10:51
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,354 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
2,740 by alejandro
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,783 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
2,100 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Rosetta Double changing mmCIF chain ID
by Victor Tobiasson » Thu, 2021-05-13 07:57
2
1,022 by Victor Tobiasson
Thu, 2021-05-13 08:33
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
5,206 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,593 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,610 by MRH
Mon, 2014-04-21 06:48
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,344 by j.schmue
Tue, 2020-01-28 13:31
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