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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
4 |
4,597 |
by zaldini Fri, 2015-01-02 05:38 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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819 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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3,425 |
by smlewis Fri, 2016-07-29 07:43 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,536 |
by gobli033 Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
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3,724 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,343 |
by rmoretti Mon, 2014-04-21 06:47 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
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3,686 |
by biofisikx Mon, 2014-04-21 06:47 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
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18,570 |
by rmoretti Mon, 2018-01-15 15:37 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
3,081 |
by felipet Sat, 2016-07-09 09:50 |
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high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
17 |
14,189 |
by albumns Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
2 |
3,151 |
by einew Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
7 |
9,056 |
by smlewis Mon, 2014-04-21 06:47 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,395 |
by rmoretti Tue, 2021-02-09 12:35 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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682 |
by Wenithor Sat, 2021-10-09 07:23 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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1,353 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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1,112 |
by rmoretti Tue, 2021-02-09 10:29 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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2,286 |
by smlewis Mon, 2014-04-21 06:48 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,412 |
by fmerino Mon, 2017-10-16 04:02 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
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2,365 |
by smlewis Mon, 2014-04-21 06:47 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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3,825 |
by alejandro Mon, 2014-04-21 06:47 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
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1,769 |
by smlewis Wed, 2016-08-24 07:23 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,674 |
by rmoretti Mon, 2018-03-19 09:08 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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3,073 |
by burkheadlab Mon, 2014-04-21 06:47 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
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2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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2,599 |
by smlewis Mon, 2014-04-21 06:47 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,557 |
by rmoretti Mon, 2014-04-21 06:48 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
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133 |
by JSK Tue, 2024-03-19 09:21 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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2,289 |
by aneamtu Mon, 2018-01-08 23:49 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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599 |
by rmoretti Mon, 2023-02-06 14:35 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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4,284 |
by rmoretti Wed, 2015-01-21 10:05 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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753 |
by tisozaki Tue, 2021-12-14 17:16 |
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Global Docking with output analysis RMS by kwu030 » Fri, 2024-02-23 09:17 |
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224 |
by rmoretti Mon, 2024-02-26 08:24 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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5,748 |
by rmoretti Thu, 2016-04-28 15:19 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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4,744 |
by Martin Floor Mon, 2014-04-21 06:47 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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3,576 |
by rmoretti Mon, 2014-04-21 06:48 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,613 |
by smlewis Mon, 2014-04-21 06:47 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,476 |
by rosend Fri, 2015-12-18 19:39 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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2,147 |
by rmoretti Tue, 2014-11-11 13:22 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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544 |
by ialvy Tue, 2022-08-30 00:00 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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990 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
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2,528 |
by rmoretti Thu, 2016-04-28 16:25 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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528 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,859 |
by kaue Mon, 2014-04-21 06:47 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
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2,616 |
by ndousis Mon, 2014-04-21 06:47 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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751 |
by matteoferla Fri, 2022-06-17 10:38 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
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5,157 |
by pepfolder Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,423 |
by IAndre Mon, 2014-04-21 06:47 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
2 |
3,205 |
by Trentage Mon, 2014-04-21 06:47 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
0 |
586 |
by almeida85 Mon, 2022-09-19 07:22 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
2 |
1,040 |
by Ken Wed, 2022-08-17 08:04 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,481 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
3,239 |
by smlewis Tue, 2016-12-20 10:40 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
7 |
6,518 |
by smlewis Mon, 2014-04-21 06:47 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
0 |
2,794 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
1 |
1,403 |
by matteoferla Fri, 2020-07-24 03:06 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
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463 |
by Delfosse57 Mon, 2023-08-07 13:16 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
1 |
2,495 |
by achambe Wed, 2016-01-13 10:46 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,474 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
13 |
12,685 |
by sabine Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
1 |
2,163 |
by smlewis Mon, 2014-04-21 06:47 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,943 |
by renedominik Mon, 2018-06-04 00:04 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
11 |
10,379 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
3,089 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
1 |
1,464 |
by dgront Thu, 2021-02-11 08:30 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
3,279 |
by phanvy Wed, 2014-12-10 00:17 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
4 |
4,712 |
by rmoretti Tue, 2015-01-06 09:58 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,790 |
by smlewis Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,978 |
by smlewis Mon, 2014-04-21 06:47 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
3,053 |
by jtmacd Mon, 2014-04-21 06:48 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
6,131 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,937 |
by mansi Mon, 2014-04-21 06:47 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
4 |
3,250 |
by eminegenetics Fri, 2018-09-21 07:42 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
2 |
4,519 |
by knutjbj Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
5,030 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
11,979 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
0 |
750 |
by ate Wed, 2021-06-16 19:19 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,944 |
by matteoferla Wed, 2019-08-21 11:58 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
1 |
1,804 |
by jadolfbr Thu, 2019-08-29 14:29 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
6,000 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
3,471 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
10,986 |
by jadolfbr Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,891 |
by Lindsay Mon, 2014-04-21 06:47 |
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FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,938 |
by swoody Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,601 |
by doranhen Mon, 2014-04-21 06:47 |
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Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,705 |
by Matthys Mon, 2014-04-21 06:47 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
4,489 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fix back bone design fixbb by Lindsay » Tue, 2012-03-06 12:30 |
26 |
22,847 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
2,289 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,700 |
by einew Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
3 |
3,650 |
by smlewis Mon, 2014-04-21 06:47 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
0 |
889 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Filters saying atom type does not exist on residue by mdm95 » Mon, 2024-03-04 15:13 |
1 |
168 |
by mdm95 Tue, 2024-03-05 14:05 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,918 |
by aaj Mon, 2016-02-22 07:43 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,437 |
by smlewis Wed, 2019-05-29 13:21 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
3 |
1,026 |
by rmoretti Mon, 2023-05-15 15:23 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
2,065 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
6 |
7,653 |
by tigerous Mon, 2014-04-21 06:47 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,590 |
by matteoferla Thu, 2021-06-03 08:24 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
5,045 |
by rmoretti Mon, 2014-04-21 06:48 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,893 |
by rmoretti Sat, 2017-12-02 10:22 |
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