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connecting rna strands together

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connecting rna strands together

Hi there, could anyone please tell me how I can connect two rna strands together via a known linker  that I don't have a structure for ?

Supposedly: RNA 1 is uaugaaaaua

RNA2 is cggcgaaagccg

and their linker is uuu

making a total of :


How can i do this via rna_denovo?


Thanks in advance for any help!


Post Situation: 
Tue, 2021-11-09 05:42

EDIT: resolved this with the tutorials, apparently all i needed to do was just fill in the full sequence into the input fasta while having the relevant fragments located in the input pdb and  the software did the rest for me


Thu, 2021-11-11 04:51