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crazy loopmodel: linear output pdbs

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crazy loopmodel: linear output pdbs

Hi there,
I've just fresh installed the last rosetta version (2014.35) and can't be able to appropriately run protocols that used to work in previous versions. It doesn't matter if I run single or mpi binaries. Loopmodel is running pretty well without warnings, however, the output pdbs are just linear aa sequences. Flags file is in attachment but I could share the entire directory by email. I woulld appreciate if someone who has experienced such problem could share the solution.

flags.txt679 bytes
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Wed, 2014-12-03 12:27