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Rosetta 3 - Applications
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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3,358 |
by Sajjad Wed, 2022-11-30 11:40 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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3,359 |
by jrcf Mon, 2015-09-21 11:10 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
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3,366 |
by Anpu Tue, 2018-09-25 18:53 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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3,368 |
by ast Mon, 2014-04-21 06:48 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,370 |
by rmoretti Mon, 2014-04-21 06:48 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
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3,385 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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3,385 |
by dswhit Tue, 2015-04-21 10:14 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
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3,389 |
by rmoretti Fri, 2015-06-19 13:53 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,395 |
by Pernille Thu, 2014-07-03 07:21 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
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3,408 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
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3,409 |
by eskici Mon, 2014-04-21 06:47 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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3,411 |
by tingting Tue, 2022-03-15 23:55 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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3,416 |
by Denise Thu, 2017-06-15 04:26 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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3,427 |
by rmoretti Tue, 2015-11-10 11:35 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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3,427 |
by jadolfbr Mon, 2014-05-12 10:41 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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3,439 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,444 |
by harshkhare Mon, 2014-04-21 06:47 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,450 |
by lanselibai Tue, 2015-02-24 02:36 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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3,453 |
by ldx022 Tue, 2022-11-29 08:38 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
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3,453 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,458 |
by glemmon Mon, 2014-04-21 06:47 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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3,458 |
by dfcoelho Tue, 2018-10-16 09:05 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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3,464 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
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3,465 |
by xun Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,465 |
by rmoretti Mon, 2014-05-12 15:16 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
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3,479 |
by mumdonar Mon, 2014-04-21 06:48 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
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3,484 |
by smlewis Mon, 2014-04-21 06:47 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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3,485 |
by rmoretti Wed, 2016-09-14 02:05 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
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3,498 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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3,501 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,501 |
by cdegut Fri, 2017-11-03 05:50 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,507 |
by jarod Mon, 2014-04-21 06:47 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
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3,513 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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3,531 |
by lanselibai Fri, 2014-09-26 14:58 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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3,534 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
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3,554 |
by rmoretti Mon, 2014-05-12 08:45 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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3,557 |
by rmoretti Fri, 2017-12-01 12:05 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
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3,562 |
by nkemjika Mon, 2014-04-21 06:47 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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3,563 |
by rmoretti Thu, 2020-01-30 15:42 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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3,580 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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3,584 |
by aloshbau Mon, 2014-04-21 06:47 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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3,584 |
by smlewis Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
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3,594 |
by rmoretti Tue, 2016-07-12 09:30 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,600 |
by smlewis Fri, 2017-01-20 08:14 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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3,600 |
by RMJ Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
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3,606 |
by agulsevin Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
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3,610 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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3,611 |
by jtmacd Fri, 2015-12-04 03:11 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,626 |
by beowulfey Tue, 2015-06-23 16:10 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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3,634 |
by attesor Thu, 2017-03-16 01:21 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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3,639 |
by kbuhr Mon, 2016-03-28 01:08 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,642 |
by smlewis Mon, 2014-04-21 06:47 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,642 |
by jrcf Mon, 2015-10-05 21:32 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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3,656 |
by fred Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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3,662 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
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3,666 |
by rmoretti Wed, 2015-09-02 12:33 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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3,669 |
by mdyini Mon, 2014-04-21 06:47 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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3,673 |
by protos_heis Tue, 2014-08-05 12:47 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
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3,681 |
by rmoretti Fri, 2016-06-17 10:36 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
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3,699 |
by dgront Mon, 2014-04-21 06:47 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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3,704 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,716 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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3,738 |
by ahonegger Mon, 2014-04-21 06:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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3,744 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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3,775 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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3,778 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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3,798 |
by rmoretti Mon, 2014-04-21 06:48 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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3,805 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
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3,826 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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3,838 |
by jadolfbr Mon, 2014-04-21 06:48 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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3,870 |
by rmoretti Mon, 2014-04-21 06:48 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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3,872 |
by ytao Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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3,874 |
by jadolfbr Thu, 2015-09-03 16:18 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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3,876 |
by smlewis Wed, 2018-08-08 15:48 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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3,883 |
by gw Mon, 2014-04-21 06:47 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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3,899 |
by rmoretti Tue, 2015-03-31 08:20 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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3,907 |
by tsztain Tue, 2018-12-11 13:41 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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3,911 |
by lanselibai Tue, 2014-09-30 02:28 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,913 |
by Derek Smith Wed, 2016-02-03 05:47 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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3,919 |
by David Weis Mon, 2017-03-13 10:59 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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3,924 |
by smlewis Fri, 2014-03-07 13:02 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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3,926 |
by Sajjad Wed, 2022-11-30 11:50 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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3,938 |
by fradom Tue, 2017-12-05 01:52 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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3,946 |
by sacch Mon, 2014-04-21 06:47 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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3,958 |
by rmoretti Mon, 2017-02-20 08:09 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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3,964 |
by dantimatter Wed, 2019-11-06 09:51 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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3,993 |
by sacch Mon, 2014-04-21 06:47 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
3,994 |
by rmoretti Mon, 2014-04-21 06:48 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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3,997 |
by parmef Mon, 2014-04-21 06:47 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,006 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
4,007 |
by aroop Mon, 2014-04-21 06:47 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,018 |
by pdbb Mon, 2014-04-21 06:47 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
4,022 |
by rmoretti Mon, 2018-11-12 14:31 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,024 |
by smlewis Mon, 2014-04-21 06:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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4,042 |
by lanselibai Thu, 2014-10-23 03:26 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
4,052 |
by rmoretti Mon, 2016-09-05 10:59 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,062 |
by kxiao Thu, 2014-06-05 08:37 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,072 |
by lanselibai Mon, 2014-11-03 13:15 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,083 |
by rmoretti Mon, 2014-04-21 06:48 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
4,088 |
by jadolfbr Thu, 2020-03-05 07:02 |
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