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Rosetta 3 - Applications
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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3,272 |
by rmoretti Tue, 2014-06-17 08:51 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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3,282 |
by smlewis Fri, 2014-03-07 13:02 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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3,289 |
by yzhou Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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3,292 |
by rmoretti Mon, 2016-09-05 10:59 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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3,294 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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3,297 |
by matteoferla Mon, 2021-07-19 06:13 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,298 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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3,301 |
by gw Mon, 2014-04-21 06:47 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
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3,308 |
by aroop Mon, 2014-04-21 06:47 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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3,314 |
by rmoretti Thu, 2017-06-01 08:52 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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3,315 |
by sacch Mon, 2014-04-21 06:47 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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3,345 |
by rmoretti Mon, 2018-03-19 12:12 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
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3,350 |
by Corvin Tue, 2020-11-10 01:22 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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3,350 |
by kxiao Thu, 2014-06-05 08:37 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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3,365 |
by rmoretti Mon, 2014-04-21 06:48 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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3,374 |
by rmoretti Mon, 2014-04-21 06:47 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
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3,379 |
by Anonymous Mon, 2014-04-21 06:47 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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3,381 |
by felipet Fri, 2017-06-16 11:42 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
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3,418 |
by smlewis Mon, 2014-04-21 06:47 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
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3,424 |
by rmoretti Mon, 2014-04-21 06:48 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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3,440 |
by lanselibai Thu, 2014-10-23 03:26 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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3,441 |
by ytao Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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3,449 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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3,453 |
by smlewis Mon, 2014-04-21 06:47 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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3,460 |
by rmoretti Thu, 2017-08-24 08:19 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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3,464 |
by sacch Mon, 2014-04-21 06:47 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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3,467 |
by lanselibai Tue, 2014-09-30 02:28 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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3,468 |
by cossio Mon, 2015-01-19 07:10 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
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3,468 |
by rmoretti Tue, 2016-07-12 09:35 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
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3,471 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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3,515 |
by parmef Mon, 2014-04-21 06:47 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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3,522 |
by sjyang7 Sat, 2017-06-03 06:09 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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3,530 |
by pdbb Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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3,564 |
by yperez Mon, 2014-04-21 06:47 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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3,591 |
by rmoretti Tue, 2017-07-18 09:00 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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3,608 |
by rmoretti Mon, 2015-02-09 12:04 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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3,609 |
by libai2098 Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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3,609 |
by smlewis Mon, 2014-04-21 06:47 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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3,630 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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3,634 |
by rmoretti Wed, 2014-07-02 16:55 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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3,639 |
by rmoretti Mon, 2014-04-21 06:48 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
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3,639 |
by smlewis Fri, 2014-03-07 14:09 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
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3,648 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
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3,659 |
by jingwei xu Wed, 2016-05-04 23:28 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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3,660 |
by fukamitka Mon, 2014-04-21 06:47 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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3,675 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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3,675 |
by ks Mon, 2016-09-12 03:14 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
6 |
3,679 |
by Loki01 Thu, 2018-02-15 13:54 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
3,681 |
by rmoretti Wed, 2015-09-09 12:08 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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3,682 |
by attesor Tue, 2015-01-27 02:20 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
3,706 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
3,715 |
by petrikigor Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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3,721 |
by smlewis Mon, 2014-04-21 06:47 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
3,730 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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3,740 |
by AmelieH Wed, 2014-11-19 11:26 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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3,761 |
by dfcoelho Wed, 2018-11-28 08:07 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
4 |
3,770 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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3,774 |
by frichter Mon, 2014-04-21 06:47 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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3,775 |
by jadolfbr Mon, 2014-04-21 06:47 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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3,780 |
by rmoretti Mon, 2014-04-21 06:48 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
3,790 |
by smlewis Tue, 2017-07-04 15:42 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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3,804 |
by lkrathn Mon, 2014-04-21 06:48 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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3,807 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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3,810 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
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3,814 |
by smlewis Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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3,819 |
by wangyr Mon, 2014-04-21 06:47 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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3,824 |
by smlewis Mon, 2014-04-21 06:47 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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3,831 |
by protos_heis Mon, 2014-04-21 06:47 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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3,838 |
by rmoretti Mon, 2014-04-21 06:47 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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3,849 |
by rmoretti Mon, 2017-01-23 08:52 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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3,853 |
by zcrook Tue, 2014-11-25 10:27 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
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3,870 |
by jianqing Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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3,896 |
by rmoretti Thu, 2015-04-30 16:46 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
5 |
3,901 |
by smlewis Mon, 2014-04-21 06:47 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
3,901 |
by lanselibai Wed, 2014-09-24 13:21 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
3,912 |
by fred Mon, 2014-04-21 06:48 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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3,922 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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3,927 |
by rmoretti Thu, 2017-07-06 13:00 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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3,941 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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3,953 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
3,953 |
by smlewis Mon, 2014-04-21 06:47 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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3,965 |
by smlewis Mon, 2014-04-21 06:47 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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3,979 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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3,988 |
by lanselibai Wed, 2014-10-15 03:52 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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4,002 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
4,008 |
by xfliu Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,010 |
by wsgosal Mon, 2014-04-21 06:48 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
4,040 |
by jadolfbr Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
4 |
4,049 |
by rmoretti Mon, 2014-04-21 06:48 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
4,067 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
4,080 |
by justin Mon, 2014-04-21 06:47 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,095 |
by rmoretti Mon, 2014-04-21 06:48 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
4,102 |
by fred Tue, 2014-04-01 08:24 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
4,146 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
4,148 |
by fede Wed, 2020-09-23 11:24 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
4,167 |
by michael_luntan Mon, 2014-04-21 06:47 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
4,171 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
4,173 |
by lzx32 Mon, 2014-04-21 06:47 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
4,177 |
by felipet Wed, 2015-02-11 05:13 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
6 |
4,205 |
by rmoretti Thu, 2014-11-20 10:46 |
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