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Rosetta 3 - Applications
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,267 |
by jarod Mon, 2014-04-21 06:47 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
3,272 |
by dantimatter Wed, 2019-11-06 09:51 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,290 |
by nkemjika Mon, 2014-04-21 06:47 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,292 |
by rmoretti Mon, 2014-05-12 08:45 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,299 |
by rmoretti Tue, 2016-07-12 09:30 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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3,303 |
by fred Mon, 2014-04-21 06:47 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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3,306 |
by smlewis Mon, 2014-04-21 06:47 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,308 |
by lanselibai Fri, 2014-09-26 14:58 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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3,309 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,322 |
by beowulfey Tue, 2015-06-23 16:10 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
3,326 |
by dfcoelho Tue, 2017-10-17 11:52 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
3,333 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,333 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,342 |
by kbuhr Mon, 2016-03-28 01:08 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
3,343 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
3,348 |
by jrcf Mon, 2015-10-05 21:32 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,355 |
by agulsevin Mon, 2014-04-21 06:48 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,356 |
by rmoretti Fri, 2016-06-17 10:36 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,356 |
by jtmacd Fri, 2015-12-04 03:11 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
3,366 |
by smlewis Wed, 2018-08-08 15:48 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
15 |
3,370 |
by amorin Sat, 2021-02-27 20:29 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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3,371 |
by aloshbau Mon, 2014-04-21 06:47 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,372 |
by rmoretti Wed, 2015-09-02 12:33 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
3,372 |
by tsztain Tue, 2018-12-11 13:41 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,382 |
by mdyini Mon, 2014-04-21 06:47 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
8 |
3,387 |
by purvi24 Mon, 2019-03-11 06:43 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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3,394 |
by RMJ Mon, 2014-04-21 06:47 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,404 |
by dgront Mon, 2014-04-21 06:47 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
3,407 |
by protos_heis Tue, 2014-08-05 12:47 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
3,424 |
by smlewis Mon, 2014-04-21 06:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
3,459 |
by smlewis Mon, 2014-04-21 06:47 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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3,469 |
by fradom Tue, 2017-12-05 01:52 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,475 |
by ahonegger Mon, 2014-04-21 06:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
3,494 |
by matteoferla Tue, 2018-10-30 02:54 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
3,516 |
by David Weis Mon, 2017-03-13 10:59 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
3,532 |
by rmoretti Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,551 |
by rmoretti Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
3,558 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
3,569 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
3,573 |
by rmoretti Tue, 2015-03-31 08:20 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
3,580 |
by rmoretti Mon, 2018-11-12 14:31 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
3,585 |
by jadolfbr Thu, 2015-09-03 16:18 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
3,592 |
by gw Mon, 2014-04-21 06:47 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
3,594 |
by rmoretti Mon, 2014-04-21 06:48 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
3,597 |
by rmoretti Mon, 2017-02-20 08:09 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
3,600 |
by rmoretti Mon, 2014-04-21 06:48 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
3,615 |
by Derek Smith Wed, 2016-02-03 05:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
3,625 |
by smlewis Fri, 2014-03-07 13:02 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
3,649 |
by sacch Mon, 2014-04-21 06:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
3,668 |
by ytao Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
3,668 |
by rmoretti Mon, 2016-09-05 10:59 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
3,680 |
by aroop Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
3,698 |
by kxiao Thu, 2014-06-05 08:37 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
4 |
3,699 |
by lanselibai Mon, 2014-11-03 13:15 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
2 |
3,702 |
by lanselibai Tue, 2014-09-30 02:28 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
5 |
3,707 |
by rmoretti Thu, 2017-01-19 09:11 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
3,726 |
by rmoretti Mon, 2014-04-21 06:48 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
3,732 |
by sacch Mon, 2014-04-21 06:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
3,737 |
by lanselibai Thu, 2014-10-23 03:26 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
3,752 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
1 |
3,770 |
by parmef Mon, 2014-04-21 06:47 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
5 |
3,770 |
by yzhou Mon, 2014-04-21 06:47 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
3,784 |
by pdbb Mon, 2014-04-21 06:47 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
3,791 |
by rmoretti Thu, 2017-06-01 08:52 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
3,801 |
by smlewis Thu, 2018-06-14 10:26 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
3,801 |
by rmoretti Mon, 2014-04-21 06:47 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
7 |
3,809 |
by jessye Fri, 2017-11-03 20:15 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
3,812 |
by Anonymous Mon, 2014-04-21 06:47 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
5 |
3,818 |
by rmoretti Mon, 2014-04-21 06:47 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
3,820 |
by rmoretti Mon, 2014-04-21 06:48 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
3,822 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
3,835 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
3,860 |
by cossio Mon, 2015-01-19 07:10 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
3,876 |
by mxp Mon, 2019-08-12 18:42 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
3,889 |
by libai2098 Mon, 2014-04-21 06:47 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
3,890 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
3,936 |
by rmoretti Tue, 2016-07-12 09:35 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
5 |
3,946 |
by felipet Fri, 2017-06-16 11:42 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
3,949 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
5 |
3,949 |
by yperez Mon, 2014-04-21 06:47 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
3,962 |
by rmoretti Wed, 2014-07-02 16:55 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
3,975 |
by fukamitka Mon, 2014-04-21 06:47 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
3,982 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
1 |
3,991 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,016 |
by smlewis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
4,020 |
by smlewis Mon, 2014-04-21 06:47 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
4,023 |
by rmoretti Tue, 2014-06-17 08:51 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
4,024 |
by rmoretti Wed, 2015-09-09 12:08 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
4,031 |
by smlewis Fri, 2014-03-07 14:09 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,036 |
by rmoretti Mon, 2014-04-21 06:47 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
4,046 |
by attesor Tue, 2015-01-27 02:20 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,048 |
by lkrathn Mon, 2014-04-21 06:48 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
4,057 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,068 |
by frichter Mon, 2014-04-21 06:47 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
5 |
4,074 |
by rmoretti Mon, 2015-02-09 12:04 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,088 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,114 |
by smlewis Mon, 2014-04-21 06:47 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
5 |
4,123 |
by sjyang7 Sat, 2017-06-03 06:09 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
4,133 |
by rmoretti Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
6 |
4,134 |
by petrikigor Mon, 2014-04-21 06:47 |
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