You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
3,427 by jrporter
Wed, 2017-07-05 06:30
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
3,430 by jhm13c
Thu, 2017-03-02 12:01
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
3,434 by brspurri
Sat, 2017-08-26 07:08
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,440 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
3,442 by chelsell
Wed, 2015-05-27 14:36
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
3,449 by brspurri
Fri, 2017-03-24 11:35
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
3,456 by weehee
Mon, 2014-04-21 06:47
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
3,457 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
3,460 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
3,461 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
3,462 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
3,471 by smlewis
Mon, 2014-04-21 06:48
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
3,493 by mtyras
Mon, 2015-06-08 03:18
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
3,494 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
3,508 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,516 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,518 by max
Thu, 2014-11-27 02:56
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
3,545 by rosend
Tue, 2015-11-17 12:12
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,552 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
3,561 by rmoretti
Tue, 2019-07-09 10:13
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,565 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,566 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
3,569 by felipet
Mon, 2014-04-21 06:47
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,593 by smlewis
Mon, 2016-05-02 08:20
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
3,602 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
3,603 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
3,609 by MJG
Tue, 2017-04-04 23:59
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
3,618 by smlewis
Wed, 2017-12-13 09:54
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
3,620 by smlewis
Sat, 2017-12-23 15:56
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,625 by eskici
Mon, 2014-04-21 06:47
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
3,631 by rmoretti
Tue, 2016-07-12 09:41
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
3,632 by ast
Mon, 2014-04-21 06:48
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
3,647 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
3,647 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,648 by Pernille
Thu, 2014-07-03 07:21
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
3,650 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
3,655 by dswhit
Tue, 2015-04-21 10:14
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,657 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
3,666 by Anpu
Tue, 2018-09-25 18:53
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
3,667 by tong
Sun, 2018-06-24 23:30
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
3,670 by smlewis
Tue, 2017-07-11 07:53
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
3,678 by mumdonar
Mon, 2014-04-21 06:48
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
3,679 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
3,684 by glemmon
Mon, 2014-04-21 06:47
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
3,701 by lanselibai
Tue, 2015-02-24 02:36
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,702 by rmoretti
Tue, 2015-11-10 11:35
Normal topic unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file
by Sajjad » Wed, 2022-11-30 11:40
1
3,713 by FJOM
Wed, 2023-05-03 07:21
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,725 by smlewis
Mon, 2014-04-21 06:47
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
3,725 by rmoretti
Mon, 2014-05-12 15:16
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,726 by jarod
Mon, 2014-04-21 06:47
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
3,728 by xun
Mon, 2014-04-21 06:47
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
3,733 by Yero
Thu, 2019-07-18 01:39
Normal topic RosettaCM Ignoring Ligand
by Delfosse57 » Sun, 2022-12-04 12:05
0
3,745 by Delfosse57
Sun, 2022-12-04 12:05
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,750 by lanselibai
Fri, 2014-09-26 14:58
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
3,750 by Denise
Thu, 2017-06-15 04:26
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
3,768 by bjharris
Sun, 2020-08-23 14:03
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
3,784 by smlewis
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,802 by RMJ
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,804 by aloshbau
Mon, 2014-04-21 06:47
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,811 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,825 by nkemjika
Mon, 2014-04-21 06:47
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
3,840 by jrcf
Mon, 2015-09-21 11:10
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,840 by agulsevin
Mon, 2014-04-21 06:48
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
3,841 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,845 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
3,851 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,868 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,872 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,881 by rmoretti
Tue, 2016-07-12 09:30
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
3,881 by rmoretti
Wed, 2016-09-14 02:05
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,881 by jrcf
Mon, 2015-10-05 21:32
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,883 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The confussion about an example in tutorial in Rosetta Virtual Workshop 2020
by ldx022 » Tue, 2022-11-29 04:58
3
3,885 by ldx022
Tue, 2022-11-29 08:38
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,892 by cdegut
Fri, 2017-11-03 05:50
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,908 by kbuhr
Mon, 2016-03-28 01:08
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,915 by smlewis
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,915 by beowulfey
Tue, 2015-06-23 16:10
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,929 by rmoretti
Wed, 2015-09-02 12:33
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,949 by smlewis
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,952 by fred
Mon, 2014-04-21 06:47
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
3,954 by protos_heis
Tue, 2014-08-05 12:47
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,965 by mdyini
Mon, 2014-04-21 06:47
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,976 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,979 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,981 by dgront
Mon, 2014-04-21 06:47
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
3,982 by smlewis
Fri, 2017-01-20 08:14
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,985 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,998 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
4,001 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
4,021 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
4,023 by rmoretti
Fri, 2017-12-01 12:05
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
4,032 by attesor
Thu, 2017-03-16 01:21
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
4,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
2
4,057 by tingting
Tue, 2022-03-15 23:55
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
4,073 by ytao
Mon, 2014-04-21 06:47
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
4,093 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
4,107 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
4,118 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
4,119 by lanselibai
Tue, 2014-09-30 02:28
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications