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Rosetta 3 - Applications

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Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,267 by jarod
Mon, 2014-04-21 06:47
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
3,272 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,290 by nkemjika
Mon, 2014-04-21 06:47
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,292 by rmoretti
Mon, 2014-05-12 08:45
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,299 by rmoretti
Tue, 2016-07-12 09:30
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,303 by fred
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,308 by lanselibai
Fri, 2014-09-26 14:58
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,309 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,322 by beowulfey
Tue, 2015-06-23 16:10
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,326 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,342 by kbuhr
Mon, 2016-03-28 01:08
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
3,343 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,348 by jrcf
Mon, 2015-10-05 21:32
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,355 by agulsevin
Mon, 2014-04-21 06:48
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,356 by rmoretti
Fri, 2016-06-17 10:36
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,356 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
3,366 by smlewis
Wed, 2018-08-08 15:48
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
3,370 by amorin
Sat, 2021-02-27 20:29
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,371 by aloshbau
Mon, 2014-04-21 06:47
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,372 by rmoretti
Wed, 2015-09-02 12:33
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
3,372 by tsztain
Tue, 2018-12-11 13:41
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,382 by mdyini
Mon, 2014-04-21 06:47
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
3,387 by purvi24
Mon, 2019-03-11 06:43
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,394 by RMJ
Mon, 2014-04-21 06:47
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,404 by dgront
Mon, 2014-04-21 06:47
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
3,407 by protos_heis
Tue, 2014-08-05 12:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,459 by smlewis
Mon, 2014-04-21 06:47
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
3,469 by fradom
Tue, 2017-12-05 01:52
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,475 by ahonegger
Mon, 2014-04-21 06:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,494 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
3,516 by David Weis
Mon, 2017-03-13 10:59
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
3,532 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,551 by rmoretti
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,558 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,569 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
3,573 by rmoretti
Tue, 2015-03-31 08:20
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
3,580 by rmoretti
Mon, 2018-11-12 14:31
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
3,585 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
3,592 by gw
Mon, 2014-04-21 06:47
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,594 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
3,597 by rmoretti
Mon, 2017-02-20 08:09
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,600 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
3,615 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
3,625 by smlewis
Fri, 2014-03-07 13:02
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
3,649 by sacch
Mon, 2014-04-21 06:47
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
3,668 by ytao
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,668 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,680 by aroop
Mon, 2014-04-21 06:47
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
3,698 by kxiao
Thu, 2014-06-05 08:37
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
3,699 by lanselibai
Mon, 2014-11-03 13:15
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,702 by lanselibai
Tue, 2014-09-30 02:28
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
3,707 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,726 by rmoretti
Mon, 2014-04-21 06:48
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,732 by sacch
Mon, 2014-04-21 06:47
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,737 by lanselibai
Thu, 2014-10-23 03:26
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55
3
3,752 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,770 by parmef
Mon, 2014-04-21 06:47
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
3,770 by yzhou
Mon, 2014-04-21 06:47
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
3,784 by pdbb
Mon, 2014-04-21 06:47
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
3,791 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
3,801 by smlewis
Thu, 2018-06-14 10:26
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,801 by rmoretti
Mon, 2014-04-21 06:47
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
3,809 by jessye
Fri, 2017-11-03 20:15
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,812 by Anonymous
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
3,818 by rmoretti
Mon, 2014-04-21 06:47
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,820 by rmoretti
Mon, 2014-04-21 06:48
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
3,822 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,835 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
3,860 by cossio
Mon, 2015-01-19 07:10
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
3,876 by mxp
Mon, 2019-08-12 18:42
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,889 by libai2098
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,890 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
3,936 by rmoretti
Tue, 2016-07-12 09:35
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
3,946 by felipet
Fri, 2017-06-16 11:42
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
3,949 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
3,949 by yperez
Mon, 2014-04-21 06:47
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,962 by rmoretti
Wed, 2014-07-02 16:55
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,975 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
3,982 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
3,991 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,020 by smlewis
Mon, 2014-04-21 06:47
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
4,023 by rmoretti
Tue, 2014-06-17 08:51
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,024 by rmoretti
Wed, 2015-09-09 12:08
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
4,031 by smlewis
Fri, 2014-03-07 14:09
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,036 by rmoretti
Mon, 2014-04-21 06:47
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
4,046 by attesor
Tue, 2015-01-27 02:20
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
4,048 by lkrathn
Mon, 2014-04-21 06:48
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
4,057 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
4,068 by frichter
Mon, 2014-04-21 06:47
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
4,074 by rmoretti
Mon, 2015-02-09 12:04
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,088 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
4,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,123 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
4,133 by rmoretti
Mon, 2014-04-21 06:47
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
4,134 by petrikigor
Mon, 2014-04-21 06:47
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