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Rosetta 3 - Applications
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,427 |
by jrporter Wed, 2017-07-05 06:30 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,430 |
by jhm13c Thu, 2017-03-02 12:01 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,434 |
by brspurri Sat, 2017-08-26 07:08 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,440 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,442 |
by chelsell Wed, 2015-05-27 14:36 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,449 |
by brspurri Fri, 2017-03-24 11:35 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,456 |
by weehee Mon, 2014-04-21 06:47 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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3,457 |
by rmoretti Thu, 2015-09-17 12:47 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
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3,460 |
by loreseeker Mon, 2014-04-21 06:47 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,461 |
by rmoretti Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,462 |
by rmoretti Fri, 2019-03-29 09:30 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,471 |
by smlewis Mon, 2014-04-21 06:48 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
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3,493 |
by mtyras Mon, 2015-06-08 03:18 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,494 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
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3,508 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,516 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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3,518 |
by max Thu, 2014-11-27 02:56 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
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3,545 |
by rosend Tue, 2015-11-17 12:12 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,552 |
by G Mustafa Thu, 2018-10-18 05:31 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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3,561 |
by rmoretti Tue, 2019-07-09 10:13 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,565 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,566 |
by rmoretti Thu, 2015-04-16 10:38 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,569 |
by felipet Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,593 |
by smlewis Mon, 2016-05-02 08:20 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
3,602 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,603 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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3,609 |
by MJG Tue, 2017-04-04 23:59 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
3,618 |
by smlewis Wed, 2017-12-13 09:54 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
3,620 |
by smlewis Sat, 2017-12-23 15:56 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
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3,625 |
by eskici Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,631 |
by rmoretti Tue, 2016-07-12 09:41 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,632 |
by ast Mon, 2014-04-21 06:48 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,647 |
by rmoretti Fri, 2015-06-19 13:53 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,647 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,648 |
by Pernille Thu, 2014-07-03 07:21 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,650 |
by harshkhare Mon, 2014-04-21 06:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,655 |
by dswhit Tue, 2015-04-21 10:14 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,657 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,666 |
by Anpu Tue, 2018-09-25 18:53 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
3,667 |
by tong Sun, 2018-06-24 23:30 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
3,670 |
by smlewis Tue, 2017-07-11 07:53 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,678 |
by mumdonar Mon, 2014-04-21 06:48 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,679 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,684 |
by glemmon Mon, 2014-04-21 06:47 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,701 |
by lanselibai Tue, 2015-02-24 02:36 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,702 |
by rmoretti Tue, 2015-11-10 11:35 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
1 |
3,713 |
by FJOM Wed, 2023-05-03 07:21 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,725 |
by smlewis Mon, 2014-04-21 06:47 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
3,725 |
by rmoretti Mon, 2014-05-12 15:16 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,726 |
by jarod Mon, 2014-04-21 06:47 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,728 |
by xun Mon, 2014-04-21 06:47 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
3,733 |
by Yero Thu, 2019-07-18 01:39 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,745 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,750 |
by lanselibai Fri, 2014-09-26 14:58 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
3,750 |
by Denise Thu, 2017-06-15 04:26 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,768 |
by bjharris Sun, 2020-08-23 14:03 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,784 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,792 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,802 |
by RMJ Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
3,804 |
by aloshbau Mon, 2014-04-21 06:47 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,811 |
by rmoretti Mon, 2014-05-12 08:45 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,825 |
by nkemjika Mon, 2014-04-21 06:47 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
3,840 |
by jrcf Mon, 2015-09-21 11:10 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,840 |
by agulsevin Mon, 2014-04-21 06:48 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
5 |
3,841 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,845 |
by jtmacd Fri, 2015-12-04 03:11 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
3,851 |
by rmoretti Mon, 2015-10-12 15:20 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,868 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
3,872 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,881 |
by rmoretti Tue, 2016-07-12 09:30 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
3,881 |
by rmoretti Wed, 2016-09-14 02:05 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
3,881 |
by jrcf Mon, 2015-10-05 21:32 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
3,883 |
by rmoretti Mon, 2014-04-21 06:47 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
3,885 |
by ldx022 Tue, 2022-11-29 08:38 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
3,892 |
by cdegut Fri, 2017-11-03 05:50 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,908 |
by kbuhr Mon, 2016-03-28 01:08 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
3,915 |
by smlewis Mon, 2014-04-21 06:47 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,915 |
by beowulfey Tue, 2015-06-23 16:10 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,929 |
by rmoretti Wed, 2015-09-02 12:33 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
3,949 |
by smlewis Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,952 |
by fred Mon, 2014-04-21 06:47 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
3,954 |
by protos_heis Tue, 2014-08-05 12:47 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,965 |
by mdyini Mon, 2014-04-21 06:47 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,976 |
by rmoretti Fri, 2016-06-17 10:36 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
3,979 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,981 |
by dgront Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
3,982 |
by smlewis Fri, 2017-01-20 08:14 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,985 |
by ahonegger Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
3,998 |
by dfcoelho Tue, 2017-10-17 11:52 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
4,001 |
by rmoretti Mon, 2014-04-21 06:47 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
4,021 |
by dfcoelho Tue, 2018-10-16 09:05 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
6 |
4,023 |
by rmoretti Fri, 2017-12-01 12:05 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
4,032 |
by attesor Thu, 2017-03-16 01:21 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
4,040 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,057 |
by tingting Tue, 2022-03-15 23:55 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,073 |
by ytao Mon, 2014-04-21 06:47 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
4,093 |
by jadolfbr Mon, 2014-04-21 06:48 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,107 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,118 |
by rmoretti Mon, 2014-04-21 06:47 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
2 |
4,119 |
by lanselibai Tue, 2014-09-30 02:28 |
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