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Rosetta3.3 installation error

Submitted by lzx32 on Wed, 2011-10-26 08:40

Dear developers,

I have downloaded Rosetta3.3 and run Scons bin mode=release. Everything seemed to be fine till I ran the tenzyme_design protocol.

Here is what I got:

/usr/local/rosetta3.3/rosetta_source/bin/enzyme_design.linuxgccrelease -database /usr/local/rosetta3.3/rosetta_database/ @flags >first_try.log

/usr/local/rosetta3.3/rosetta_source/bin/enzyme_design.linuxgccrelease: error while loading shared libraries: libprotocols.so: cannot open shared object file: No such file or directory

I can find the liprprotocols.so file in one of the directories:

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Rosetta 3 - Build/Install

ld: cannot find -lz

Submitted by UliG on Wed, 2011-10-19 03:45

Dear colleagues,

I am trying to install Rosetta 3.3 on:

- HP ProLiant DL380 G6
- CPU: 2 x Intel Xeon Quad Core
- OS = SUSE SLES 11, kernel 2.6.27.19, x86_64
- compiler: gcc 4.3-62.198-x86_64
- python: 2.6.5
- scons: 2.1.0

command: scons bin mode=release

crash + error message:

/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm

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Rosetta 3 - Build/Install

error: CPU you selected does not support x86-64 instruction set [SOLVED]

Submitted by UliG on Mon, 2011-10-17 08:03

Dear colleagues,

I am trying to install Rosetta 3.3 on:

- HP ProLiant DL380 G6
- CPU: 2 x Intel Xeon Quad Core
- OS = SUSE SLES 11, kernel 2.6.27.19, x86_64
- compiler: gcc 4.3-62.198-x86_64
- python: 2.6.5
- scons: 2.1.0

command: scons bin mode=release OR additionally arch=x86 arch_size=64

crash + error message:

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Rosetta 3 - Build/Install

Build with InterfaceStrucMaker.cc

Submitted by gw on Thu, 2011-08-25 10:45

Hello, I would like to be able to use the InterfaceStructMaker protocol which my lab obtained from the "svn" (or some similar name - the database that developers use to share). I tried putting the .cc file in src/apps/public/ and then modifying the file src/apps.src.settings to contain InterfaceStructMaker after "public" : [

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Rosetta 3 - Build/Install

gcc/scons Rosetta3.3 compile error on RHEL5, 32bit Linux, scons0.98.4, python2.6.2, gcc 4.1.2

Submitted by zigeuner on Thu, 2011-08-11 09:52

Hi guys,
I'm getting a strange error during the build process when I try to compile the new 3.3 version. I haven't had problems on the same computer/setup with previous versions. The problem appears to be that scons is passing bad commandline options to gcc, specifically a '- s t d = c 9 9' string where the spaces are giving gcc hiccups. Any ideas? I tried correcting the gcc commandline, running separately, then going back to the scons commands again. It just has a problem on the next compilation instead. Scons output is below.

thanks!

-Louis

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Rosetta 3 - Build/Install

rosetta 3.3 Installation failed by Segmentation fault

Submitted by xpzhang on Wed, 2011-08-03 10:48

I downloaded Rosetta3.3_bundles.tgz, but file failed to be uncompressed. I downloaded rosetta3.3_source.tgz and rosetta3.3_database.tgz packages and tried to install it on my Fedora 13, which supported Rosetta 3.1, 3.2 and 3.2.1. Unfortunately, the compilation of Rosetta 3.3 failed by Segmentation fault. My system uses scons-2.0.1-1.fc13.noarch. I used "scons bin mode=release" command line.

The second question concerning the new release is: apart from the new functions, is there any change/improvement on the old programs (for example AbinitioRelax) exist in release 3.2.1?

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Rosetta 3.3 build error in RHEL 6.1

Submitted by b5foan on Tue, 2011-08-02 02:34

Trying to build Rosetta 3.3 on RHEL 6.1 64-bit machine.

gcc 4.4.5, Python 2.6.6, scons in Rosetta

admin@computer in rosetta_source: external/scons-local/scons.py -j4 bin mode=release

blah, blah, blah

src/protocols/nonlocal/NonlocalAbinitioReader.cc: In static member function 'static void protocols::nonlocal::NonlocalAbinitioReader::read(const std::string&, utility::vector1 >*)':
src/protocols/nonlocal/NonlocalAbinitioReader.cc:112: internal compiler error: Segmentation fault

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