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Rosetta 3 - General

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Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,474 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,695 by matteoferla
Thu, 2018-09-13 06:21
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
2,287 by smlewis
Mon, 2014-04-21 06:47
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,942 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,941 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,805 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
2,320 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
2,168 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
2,208 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,758 by rmoretti
Mon, 2017-03-06 08:37
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,278 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
562 by almeida85
Fri, 2022-08-12 05:56
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,815 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
2,050 by rmoretti
Fri, 2014-09-12 09:11
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,728 by rmoretti
Tue, 2015-11-10 11:52
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
2,207 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,406 by smlewis
Wed, 2020-03-04 07:40
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
1
661 by JasonIsaac
Mon, 2022-12-05 18:41
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
2,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,628 by rmoretti
Wed, 2017-09-06 08:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
2,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,282 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
3,972 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,683 by smlewis
Wed, 2017-03-22 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,597 by jkleman
Sat, 2018-04-14 10:55
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,621 by rmoretti
Tue, 2019-07-09 15:57
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
2,314 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
2,375 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
2,041 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
1,986 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
555 by rmoretti
Wed, 2022-09-07 09:19
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
3,101 by rmoretti
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
2,103 by frichter
Mon, 2014-04-21 06:47
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,240 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
2,126 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,546 by vmulligan
Sat, 2020-04-11 17:40
Normal topic I Need Help on Validation for a Ligand Docking Experiment.
by tbelec » Sat, 2021-03-20 13:27
1
1,400 by matteoferla
Mon, 2021-03-22 08:29
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
2,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,561 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,413 by rmoretti
Wed, 2019-09-18 10:49
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,251 by rmoretti
Tue, 2021-02-09 12:25
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
947 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
465 by JW_24
Tue, 2023-01-24 04:55
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
2,050 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,252 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,618 by rmoretti
Sat, 2014-03-22 11:40
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
2,101 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
1,013 by ahuls1
Thu, 2021-07-29 13:23
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,480 by smlewis
Mon, 2014-04-21 06:47
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
2,285 by rmoretti
Thu, 2014-10-16 10:33
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,898 by smlewis
Sun, 2016-01-10 10:02
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,135 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
2,266 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,564 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
2,066 by jkleman
Tue, 2018-07-31 13:19
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
1,303 by dgront
Thu, 2021-02-11 08:30
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,485 by rmoretti
Mon, 2014-04-21 06:47
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
6,011 by rmoretti
Tue, 2014-07-01 12:45
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
1,491 by ac.research
Sat, 2017-11-18 06:54
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,421 by jkleman
Thu, 2020-01-16 11:05
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,993 by smlewis
Mon, 2014-04-21 06:47
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
2,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
5,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,809 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,469 by rmoretti
Mon, 2017-08-21 09:55
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
1,234 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
2,153 by jtmacd
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,410 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,792 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
702 by matteoferla
Wed, 2022-07-20 10:33
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,900 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,309 by renedominik
Wed, 2020-02-12 06:16
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,612 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
2,190 by smlewis
Mon, 2014-04-21 06:47
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,452 by smlewis
Mon, 2014-04-21 06:47
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,884 by smlewis
Mon, 2014-04-21 06:48
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
2,120 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,142 by rmoretti
Mon, 2015-05-25 11:07
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,786 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,627 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,633 by smlewis
Mon, 2014-04-21 06:47
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,513 by matteoferla
Tue, 2020-06-23 10:58
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
782 by rmoretti
Tue, 2022-08-09 06:52
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
3,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
3,096 by smlewis
Tue, 2014-12-23 13:58
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
2,558 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,922 by smlewis
Mon, 2018-04-16 16:32
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,544 by rmoretti
Tue, 2019-07-09 15:48
Normal topic Using specific rotamers
by sahn97 » Fri, 2022-08-26 13:45
1
594 by rmoretti
Fri, 2022-08-26 14:51
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
2,156 by smlewis
Mon, 2014-04-21 06:47
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
1,213 by aloshbau
Tue, 2021-03-09 02:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
2,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
2,154 by rmoretti
Tue, 2014-06-10 11:34
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
2,020 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
2,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,984 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
2,848 by smlewis
Fri, 2014-02-28 05:45
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
2,069 by rmoretti
Mon, 2017-05-15 09:03
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
1
598 by rmoretti
Mon, 2022-09-12 06:58
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
2,273 by smlewis
Mon, 2014-04-21 06:47
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