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Rosetta 3 - General

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Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,216 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
2,970 by franfdez
Mon, 2014-04-21 06:47
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,129 by smlewis
Fri, 2019-06-28 13:56
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
833 by matteoferla
Mon, 2021-08-09 01:53
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
2,024 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,662 by reddybg
Mon, 2014-04-21 06:47
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,288 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,420 by rmoretti
Mon, 2018-02-05 15:44
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
1,216 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,041 by rmoretti
Fri, 2015-07-03 13:04
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,050 by rmoretti
Mon, 2019-11-04 12:54
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
1,033 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
1
123 by rmoretti
Mon, 2023-02-06 14:35
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
3,847 by rmoretti
Mon, 2017-11-06 07:36
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
1,320 by smlewis
Tue, 2018-08-07 16:59
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
1,035 by brownbp1
Tue, 2021-02-09 12:12
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,803 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
3,658 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
1,740 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
1,076 by rmoretti
Mon, 2019-08-26 14:52
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
792 by asbelx
Wed, 2021-09-08 23:19
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,953 by jtmacd
Mon, 2014-04-21 06:47
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
2,078 by smlewis
Fri, 2014-11-07 12:03
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,449 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
1,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,045 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
1,747 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,054 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,530 by rmoretti
Thu, 2016-09-08 07:56
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,520 by rmoretti
Sat, 2017-12-02 10:22
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,200 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
999 by rmoretti
Wed, 2021-02-03 14:45
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
130 by rmoretti
Fri, 2023-02-24 13:58
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,665 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
2,035 by wlzhang
Sun, 2014-04-20 18:17
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,583 by ssrb
Tue, 2016-07-12 10:02
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
1,026 by rmoretti
Tue, 2020-10-13 11:40
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,127 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,831 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
3,138 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
1,765 by smlewis
Mon, 2018-03-12 09:57
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
1,174 by rmoretti
Wed, 2019-04-03 10:03
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
934 by windmill
Thu, 2020-06-18 21:32
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,651 by IAndre
Mon, 2014-04-21 06:47
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,652 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,659 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
2,023 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,343 by jyy
Mon, 2020-01-13 17:19
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
2,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,941 by rmoretti
Mon, 2014-06-09 10:05
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,795 by rmoretti
Fri, 2015-07-03 13:24
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
2,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
2,013 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,440 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
1,038 by matteoferla
Fri, 2020-07-24 03:06
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
2,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,752 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,750 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,880 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,374 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,800 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,471 by rmoretti
Fri, 2017-09-08 15:15
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
2,196 by smlewis
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,215 by yuvals
Sat, 2014-06-21 02:17
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
996 by rmoretti
Tue, 2021-02-09 11:30
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,239 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,900 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,532 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,104 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,943 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,270 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
2,066 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,334 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,058 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,723 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,497 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,800 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,090 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,577 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,691 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
781 by cryosky
Fri, 2021-09-17 22:04
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,695 by smlewis
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,407 by jtmacd
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,878 by rmoretti
Sat, 2018-03-17 10:43
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,661 by smlewis
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,275 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,468 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,299 by rmoretti
Mon, 2018-03-19 09:08
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,207 by vmulligan
Mon, 2019-04-08 14:49
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,872 by sid
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,826 by Lati
Fri, 2015-11-20 03:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
724 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
60 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,658 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,895 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,842 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,468 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,212 by smlewis
Thu, 2018-06-28 13:34
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