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Rosetta 3 - General
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
4,448 |
by smlewis Mon, 2014-04-21 06:47 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
4,453 |
by phanvy Wed, 2014-10-08 01:42 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
4,464 |
by rmoretti Mon, 2014-04-21 06:48 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
4,470 |
by pepfolder Mon, 2014-04-21 06:47 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
4,476 |
by obdulia Wed, 2016-07-13 09:11 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
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4,489 |
by Apiwat Sat, 2014-02-08 01:41 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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4,535 |
by Lindsay Mon, 2014-04-21 06:48 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
4,552 |
by smlewis Sun, 2017-01-15 18:14 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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4,562 |
by rmoretti Tue, 2015-11-10 11:52 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
4,580 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
4,587 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
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4,604 |
by rmoretti Mon, 2014-04-21 06:47 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
4,609 |
by fukamitka Mon, 2014-04-21 06:48 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
3 |
4,618 |
by smlewis Mon, 2014-04-21 06:47 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
4,619 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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4,627 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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4,631 |
by jadolfbr Mon, 2014-04-21 06:47 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
4 |
4,636 |
by lqzhang Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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4,637 |
by MRH Mon, 2014-04-21 06:48 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
4,648 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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4,652 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
5 |
4,672 |
by doranhen Mon, 2014-04-21 06:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
5 |
4,683 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
3 |
4,699 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
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4,720 |
by smlewis Mon, 2014-04-21 06:47 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
4,722 |
by syoifczeri Mon, 2015-11-02 03:59 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
4,731 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
4,732 |
by smlewis Mon, 2014-04-21 06:47 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
6 |
4,736 |
by smlewis Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
6 |
4,748 |
by Anonymous Mon, 2014-04-21 06:47 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
4,760 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
1 |
4,765 |
by smlewis Mon, 2014-04-21 06:47 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
4,769 |
by tevang Mon, 2014-04-21 06:47 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
4,772 |
by jwillis Sat, 2015-06-27 21:11 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
4,776 |
by kbuhr Tue, 2015-07-14 04:30 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
6 |
4,828 |
by rmoretti Fri, 2014-03-28 09:03 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
7 |
4,849 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
7 |
4,863 |
by shadrinams Mon, 2018-02-12 11:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
7 |
4,871 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
4,871 |
by cossio Thu, 2015-01-29 11:50 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
5 |
4,886 |
by einew Mon, 2014-04-21 06:47 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
4,893 |
by G Mustafa Fri, 2021-09-10 01:16 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
4,904 |
by rmoretti Thu, 2015-04-16 10:09 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
7 |
4,911 |
by krdav Wed, 2016-08-17 12:57 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
6 |
4,919 |
by robren Mon, 2014-04-21 06:47 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
6 |
4,926 |
by Anonymous Mon, 2014-04-21 06:47 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
6 |
4,931 |
by rmoretti Thu, 2016-04-28 16:15 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
1 |
4,959 |
by yuvals Sat, 2014-06-21 02:17 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
5,001 |
by lanselibai Fri, 2014-12-12 10:27 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
5,014 |
by rosend Fri, 2015-12-18 19:39 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
6 |
5,017 |
by jurkm Mon, 2014-04-21 06:47 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
6 |
5,027 |
by vmulligan Thu, 2020-07-16 23:31 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
8 |
5,029 |
by jtmacd Mon, 2014-04-21 06:47 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
7 |
5,079 |
by rmoretti Thu, 2016-02-04 09:29 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
5 |
5,104 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
5,119 |
by ac.research Fri, 2017-08-18 00:57 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
4 |
5,140 |
by kwak Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
7 |
5,150 |
by smlewis Mon, 2014-04-21 06:47 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
5,171 |
by rosa Mon, 2014-04-21 06:48 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
1 |
5,172 |
by rmoretti Tue, 2014-07-01 12:45 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
5,175 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
4 |
5,195 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
5,230 |
by einew Mon, 2014-04-21 06:47 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
5 |
5,240 |
by ssrb Tue, 2015-09-22 08:35 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
5,240 |
by qlj Mon, 2014-04-21 06:47 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
5,246 |
by smlewis Mon, 2014-04-21 06:47 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
6 |
5,271 |
by smlewis Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
5,277 |
by Lindsay Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
5,289 |
by smlewis Mon, 2014-04-21 06:47 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
5,304 |
by smlewis Mon, 2014-04-21 06:48 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
5,328 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
5,329 |
by smlewis Mon, 2014-04-21 06:47 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
5,345 |
by rmoretti Mon, 2014-04-21 06:48 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
5,364 |
by smlewis Tue, 2018-06-19 09:28 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
5,383 |
by sk0319 Wed, 2017-01-11 10:52 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,412 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
7 |
5,419 |
by smlewis Mon, 2014-04-21 06:47 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
6 |
5,424 |
by smlewis Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
5,441 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
5,460 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
5,501 |
by rmoretti Thu, 2014-07-17 09:21 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
11 |
5,508 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
6 |
5,509 |
by doranhen Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
5,517 |
by rmoretti Mon, 2014-11-03 16:39 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
5,529 |
by einew Mon, 2014-04-21 06:47 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
7 |
5,559 |
by Anonymous Mon, 2014-04-21 06:47 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
7 |
5,615 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
7 |
5,638 |
by exchhattu Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
2 |
5,656 |
by lanselibai Mon, 2014-09-22 08:13 |
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Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
7 |
5,666 |
by JuliusSu Wed, 2014-03-19 20:38 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
6 |
5,794 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
5,814 |
by rmoretti Mon, 2014-04-21 06:48 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
5,824 |
by rmoretti Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
5,828 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
5,840 |
by ritacc18 Mon, 2014-04-21 06:47 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
11 |
5,852 |
by smlewis Tue, 2017-08-29 08:56 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
5,924 |
by jrcf Wed, 2016-03-23 12:16 |
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building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
8 |
5,925 |
by gsmurphy Mon, 2014-04-21 06:47 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
6 |
5,939 |
by smlewis Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
5,951 |
by rmoretti Mon, 2014-04-21 06:48 |
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