You are here

Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
4,448 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
4,453 by phanvy
Wed, 2014-10-08 01:42
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,464 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
4,470 by pepfolder
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
4,476 by obdulia
Wed, 2016-07-13 09:11
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
4,489 by Apiwat
Sat, 2014-02-08 01:41
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
4,535 by Lindsay
Mon, 2014-04-21 06:48
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
4,552 by smlewis
Sun, 2017-01-15 18:14
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
4,562 by rmoretti
Tue, 2015-11-10 11:52
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
4,580 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
4,587 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
4,604 by rmoretti
Mon, 2014-04-21 06:47
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
4,609 by fukamitka
Mon, 2014-04-21 06:48
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
4,618 by smlewis
Mon, 2014-04-21 06:47
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
4,619 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
4,627 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
4,631 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1-how to run parallel tasks?
by wtscrystal » Fri, 2009-11-06 03:23
4
4,636 by lqzhang
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
4,637 by MRH
Mon, 2014-04-21 06:48
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
4,648 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
4,652 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
4,672 by doranhen
Mon, 2014-04-21 06:47
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
4,683 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
4,699 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
4,720 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
4,722 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
4,731 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
4,732 by smlewis
Mon, 2014-04-21 06:47
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
4,736 by smlewis
Mon, 2014-04-21 06:47
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
4,748 by Anonymous
Mon, 2014-04-21 06:47
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
4,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
4,765 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
4,769 by tevang
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
4,772 by jwillis
Sat, 2015-06-27 21:11
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
4,776 by kbuhr
Tue, 2015-07-14 04:30
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
4,828 by rmoretti
Fri, 2014-03-28 09:03
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
4,849 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
4,863 by shadrinams
Mon, 2018-02-12 11:47
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40
7
4,871 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
4,871 by cossio
Thu, 2015-01-29 11:50
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
4,886 by einew
Mon, 2014-04-21 06:47
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
6
4,893 by G Mustafa
Fri, 2021-09-10 01:16
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
4,904 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
4,911 by krdav
Wed, 2016-08-17 12:57
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
4,919 by robren
Mon, 2014-04-21 06:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
4,926 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
4,931 by rmoretti
Thu, 2016-04-28 16:15
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
4,959 by yuvals
Sat, 2014-06-21 02:17
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
5,001 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
5,014 by rosend
Fri, 2015-12-18 19:39
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
5,017 by jurkm
Mon, 2014-04-21 06:47
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
5,027 by vmulligan
Thu, 2020-07-16 23:31
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
5,029 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
5,079 by rmoretti
Thu, 2016-02-04 09:29
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
5,104 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
5,119 by ac.research
Fri, 2017-08-18 00:57
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
5,140 by kwak
Mon, 2014-04-21 06:47
Normal topic General Protein Folding Question
by twopint23oz » Sun, 2012-04-01 22:57
7
5,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
5,171 by rosa
Mon, 2014-04-21 06:48
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
5,172 by rmoretti
Tue, 2014-07-01 12:45
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
5,175 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
5,195 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
5,230 by einew
Mon, 2014-04-21 06:47
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
5,240 by ssrb
Tue, 2015-09-22 08:35
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
5,240 by qlj
Mon, 2014-04-21 06:47
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
5,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to cluster loop?
by albumns » Wed, 2011-01-05 19:48
6
5,271 by smlewis
Mon, 2014-04-21 06:47
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
5,277 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
5,289 by smlewis
Mon, 2014-04-21 06:47
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
5,304 by smlewis
Mon, 2014-04-21 06:48
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
5,328 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
5,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
5,345 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
5,364 by smlewis
Tue, 2018-06-19 09:28
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
5,383 by sk0319
Wed, 2017-01-11 10:52
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
5,412 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
5,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
5,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
5,441 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use AbinitioRelax.mpi.linuxgccrelease?
by albumns » Mon, 2012-03-26 22:50
5
5,460 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
5,501 by rmoretti
Thu, 2014-07-17 09:21
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
5,508 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
5,509 by doranhen
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
5,517 by rmoretti
Mon, 2014-11-03 16:39
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
5,529 by einew
Mon, 2014-04-21 06:47
Normal topic How does one prevent Rosetta from connecting two separate chains?
by jhbrown » Thu, 2011-12-15 14:08
7
5,559 by Anonymous
Mon, 2014-04-21 06:47
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
5,615 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic rerun same experiment on MPI.
by exchhattu » Tue, 2010-02-23 21:14
7
5,638 by exchhattu
Mon, 2014-04-21 06:47
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
5,656 by lanselibai
Mon, 2014-09-22 08:13
Normal topic Reproducing Rosetta++ scoring function with Rosetta 3?
by JuliusSu » Mon, 2014-03-17 21:15
7
5,666 by JuliusSu
Wed, 2014-03-19 20:38
Normal topic How to define specific residues in alascan ?
by Park » Mon, 2011-06-13 19:56
6
5,794 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
5,814 by rmoretti
Mon, 2014-04-21 06:48
Normal topic I am a beginner in rosetta software and need help to build params file
by nais » Fri, 2011-03-18 13:37
3
5,824 by rmoretti
Mon, 2014-04-21 06:47
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
5,828 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
5,840 by ritacc18
Mon, 2014-04-21 06:47
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
5,852 by smlewis
Tue, 2017-08-29 08:56
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
5,924 by jrcf
Wed, 2016-03-23 12:16
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
5,925 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
5,939 by smlewis
Mon, 2014-04-21 06:47
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
5,951 by rmoretti
Mon, 2014-04-21 06:48
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General