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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
4,507 by smlewis
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
4,508 by einew
Mon, 2014-04-21 06:47
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
4,508 by rmoretti
Mon, 2015-02-09 11:21
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
4,526 by rmoretti
Tue, 2014-04-01 08:12
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
4,533 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
4,535 by albumns
Mon, 2014-04-21 06:47
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
4,536 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
4,541 by knutjbj
Mon, 2014-04-21 06:47
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
4,541 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
4,548 by Loki01
Thu, 2017-12-14 06:20
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
4,548 by IAndre
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
4,550 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
4,566 by rmoretti
Mon, 2018-01-15 15:34
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
4,572 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
4,576 by jwillis
Sat, 2015-02-07 20:40
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
4,578 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 12:58
12
4,600 by kwu030
Thu, 2023-05-18 08:31
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
4,606 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
4,611 by dgront
Mon, 2014-04-21 06:47
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
4,617 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
4,633 by ac.research
Mon, 2017-09-04 16:43
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
4,650 by zaldini
Fri, 2015-01-02 05:38
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
4,680 by smlewis
Tue, 2018-07-03 11:22
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
4,686 by zaldini
Wed, 2015-01-07 20:35
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
4,700 by renedominik
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
4,706 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
4,712 by phanvy
Thu, 2014-10-16 18:54
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
4,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,728 by saxen
Mon, 2016-04-25 10:38
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
4,730 by cheyuk
Sun, 2015-09-20 02:08
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
4,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make a resfile
by dflaher » Fri, 2017-11-03 10:26
3
4,744 by smlewis
Wed, 2017-11-08 12:08
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
4,745 by rmoretti
Mon, 2018-11-12 14:29
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,750 by smlewis
Mon, 2014-04-21 06:47
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
4,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
4,756 by lzx32
Mon, 2014-04-21 06:47
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
4,759 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
4,760 by rmoretti
Tue, 2015-01-06 09:58
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,764 by smlewis
Wed, 2016-07-13 23:41
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
4,772 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
4,785 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
4,797 by pardave
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
4,802 by gw
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
4,805 by pachecoj
Wed, 2017-03-29 12:32
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
4,811 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
4,814 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
5
4,838 by matteoferla
Wed, 2021-09-29 01:58
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,841 by rmoretti
Sat, 2014-03-22 11:40
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
4,862 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
4,863 by smlewis
Wed, 2018-03-21 08:42
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
4,895 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
4,912 by rmoretti
Thu, 2017-08-03 09:01
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
4,917 by rmoretti
Mon, 2018-08-20 11:45
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
4,919 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
4,920 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
4,920 by aneamtu
Thu, 2018-01-18 00:56
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
4,924 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
4,924 by smlewis
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
4,931 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
4,944 by rmoretti
Thu, 2016-09-08 10:56
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
4,963 by smlewis
Mon, 2014-04-21 06:47
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
4,981 by rmoretti
Mon, 2015-03-30 14:43
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
5,005 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
5,007 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
5,029 by rmoretti
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
5,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
5,051 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
5,064 by rmoretti
Mon, 2017-11-06 07:36
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
5,076 by albumns
Mon, 2014-04-21 06:47
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
5,084 by w107kdk
Mon, 2014-04-21 06:47
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
5,086 by nitroamos
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
5,090 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
5,091 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
5,095 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
5,102 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
5,110 by rmoretti
Mon, 2014-04-21 06:48
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
5,125 by cossio
Thu, 2014-12-04 05:41
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
5,128 by Ashafix
Mon, 2014-04-21 06:48
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
5,151 by smlewis
Mon, 2014-04-21 06:47
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
5,153 by Sandy
Fri, 2015-08-07 15:49
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
5,155 by jurkm
Mon, 2014-04-21 06:47
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
5,161 by smlewis
Tue, 2016-08-30 13:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
5,172 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
5,192 by pepfolder
Mon, 2014-04-21 06:47
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
5,204 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
5,204 by salvatta
Mon, 2018-09-10 10:04
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
5,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
5,235 by smlewis
Mon, 2014-04-21 06:47
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
5,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
5,253 by rpache
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
5,296 by smlewis
Mon, 2014-04-21 06:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
5,321 by banshee
Tue, 2016-04-26 00:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
5,330 by rmoretti
Fri, 2018-08-24 11:59
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
5,339 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
5,355 by helenah
Tue, 2020-11-03 04:33
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
5,357 by arthuc01
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
5,390 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
5,392 by Ashafix
Wed, 2014-02-19 06:53
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
5,400 by rmoretti
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
5,408 by smlewis
Mon, 2014-04-21 06:47
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