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Rosetta 3 - General

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Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
4,134 by knutjbj
Mon, 2014-04-21 06:47
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
4,141 by rmoretti
Thu, 2016-09-08 10:56
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
4,150 by gw
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
4,158 by albumns
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
4,160 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
4,164 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
4,165 by lzx32
Mon, 2014-04-21 06:47
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
4,179 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
4,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
4,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
4,210 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
4,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
4,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
4,247 by smlewis
Tue, 2016-08-30 13:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
4,265 by pachecoj
Sat, 2014-08-09 06:33
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
4,271 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
4,274 by rmoretti
Mon, 2015-03-30 14:43
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
4,293 by ac.research
Mon, 2020-02-10 08:19
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
4,314 by matteoferla
Sat, 2020-09-12 03:02
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
4,320 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
4,325 by nitroamos
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
4,330 by cossio
Thu, 2014-12-04 05:41
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,339 by rmoretti
Sat, 2014-03-22 11:40
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
4,362 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
4,375 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
4,403 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
4,406 by cannond
Wed, 2017-03-08 03:00
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
4,408 by jtmacd
Mon, 2014-04-21 06:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
4,432 by banshee
Tue, 2016-04-26 00:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
4,438 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
4,438 by rpache
Mon, 2014-04-21 06:47
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
4,440 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
4,477 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,498 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
4,499 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
4,505 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
4,519 by jurkm
Mon, 2014-04-21 06:47
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
4,525 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
4,531 by attesor
Mon, 2014-04-21 06:47
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,576 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
4,581 by Karol
Thu, 2016-12-15 01:35
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
4,586 by smlewis
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
4,594 by smlewis
Mon, 2014-04-21 06:47
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
4,628 by smlewis
Mon, 2014-04-21 06:47
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
4,631 by smlewis
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
4,632 by linucks
Wed, 2018-04-25 08:50
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,638 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
4,643 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
4,644 by pholland
Mon, 2014-04-21 06:47
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
4,647 by weallen
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
4,658 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
4,660 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
4,670 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
4,693 by byin
Mon, 2014-04-21 06:47
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
4,694 by glemmon
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
4,695 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
4,699 by arthuc01
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
4,702 by zeynep
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
4,709 by rosa
Mon, 2014-04-21 06:48
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
4,723 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
4,739 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
4,743 by pepfolder
Mon, 2014-04-21 06:47
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
4,747 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,762 by rmoretti
Sat, 2014-05-17 14:10
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
4,766 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
4,772 by biofisikx
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
4,791 by smlewis
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,791 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
4,794 by rmoretti
Tue, 2021-02-09 11:52
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
4,805 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
4,817 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,827 by aroop
Mon, 2014-04-21 06:47
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
4,847 by rmoretti
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
4,849 by albumns
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
4,874 by jarod
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
4,879 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,886 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
4,919 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
4,945 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
4,956 by phanvy
Wed, 2014-10-08 01:42
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
4,995 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
5,053 by Lindsay
Mon, 2014-04-21 06:48
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
5,065 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
5,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
5,075 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
5,084 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
5,090 by Apiwat
Sat, 2014-02-08 01:41
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
5,098 by sunhwan
Mon, 2017-02-27 11:02
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
5,117 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
5,118 by MRH
Mon, 2014-04-21 06:48
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
5,127 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
5,130 by obdulia
Wed, 2016-07-13 09:11
Normal topic rosetta 3.1-how to run parallel tasks?
by wtscrystal » Fri, 2009-11-06 03:23
4
5,153 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
5,161 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
5,171 by jwillis
Sat, 2015-06-27 21:11
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
5,181 by arthuc01
Mon, 2014-04-21 06:47
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
5,190 by fukamitka
Mon, 2014-04-21 06:48
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
5,191 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
5,192 by smlewis
Mon, 2014-04-21 06:47
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