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Rosetta 3 - General

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Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
6,260 by rmoretti
Mon, 2014-11-03 16:39
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,616 by jtmacd
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
2,817 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,631 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,389 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,553 by DanielK
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,327 by Anonymous
Mon, 2014-04-21 06:47
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
2
647 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
421 by Karthik
Wed, 2022-07-13 23:45
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
8,407 by smlewis
Mon, 2014-04-21 06:47
Normal topic pmut and scoring
by ldlamini » Tue, 2021-09-14 00:46
3
1,827 by matteoferla
Mon, 2021-09-20 06:05
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,958 by nawsad
Wed, 2014-06-25 13:26
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
2,015 by rmoretti
Tue, 2014-11-04 10:35
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,803 by ssrb
Tue, 2016-07-12 10:02
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
1,372 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
5,397 by rmoretti
Mon, 2014-04-21 06:47
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,859 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,708 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
2,272 by smlewis
Wed, 2019-12-04 13:07
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,816 by rmoretti
Thu, 2015-08-06 09:21
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
4,032 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
589 by rmoretti
Tue, 2022-09-06 08:13
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
4,067 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
6,956 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,366 by smlewis
Mon, 2014-04-21 06:47
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,945 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,503 by matteoferla
Tue, 2020-06-23 10:58
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,976 by rmoretti
Mon, 2016-11-14 15:12
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,264 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,428 by rmoretti
Mon, 2018-10-08 11:20
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
2,274 by everyday847
Thu, 2021-04-01 11:59
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
2,333 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
981 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,078 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,188 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
3,417 by smlewis
Mon, 2014-04-21 06:47
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,914 by nawsad
Fri, 2014-06-20 03:00
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,404 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,592 by smlewis
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19
22
18,027 by Anonymous
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,400 by smlewis
Mon, 2014-04-21 06:47
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
6,396 by rmoretti
Mon, 2014-04-21 06:48
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
4,672 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,126 by rmoretti
Mon, 2015-05-25 11:07
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
832 by jgustat
Fri, 2022-07-01 13:26
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
779 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
2,058 by rmoretti
Mon, 2017-05-15 09:03
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
6,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,071 by rmoretti
Mon, 2014-04-21 06:48
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
1,178 by rmoretti
Tue, 2021-04-13 06:42
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
3,391 by smlewis
Mon, 2014-04-21 06:47
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
387 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
647 by Antonia
Wed, 2021-06-16 12:30
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
3,258 by scombs
Mon, 2014-04-21 06:47
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
645 by CameronJA
Mon, 2021-06-14 16:12
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,614 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,071 by fred
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
10,261 by dgront
Mon, 2014-04-21 06:47
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
4,925 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
4,151 by Victor
Fri, 2014-01-31 10:41
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,949 by rmoretti
Fri, 2016-04-08 08:43
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,379 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
782 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,507 by rmoretti
Mon, 2014-06-16 08:23
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
5,892 by robren
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
3,146 by smlewis
Thu, 2016-01-14 08:19
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,796 by rmoretti
Tue, 2016-07-12 08:40
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
2,173 by smlewis
Mon, 2014-04-21 06:47
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
19,359 by smlewis
Tue, 2016-06-28 09:05
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,837 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,726 by rmoretti
Thu, 2016-09-08 07:56
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
3,484 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,936 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
2,015 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
3,798 by franfdez
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,279 by rmoretti
Fri, 2015-07-03 13:04
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
5,277 by rmoretti
Mon, 2014-04-21 06:47
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
413 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,367 by smlewis
Fri, 2019-06-28 13:56
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,606 by jarek
Mon, 2014-04-21 06:48
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
1,032 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
4,073 by smlewis
Thu, 2016-04-21 16:00
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,987 by rmoretti
Tue, 2018-04-10 16:00
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,771 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
576 by rmoretti
Tue, 2022-09-06 08:22
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
4,277 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
3,048 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,769 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
933 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
4,173 by rmoretti
Tue, 2015-09-08 10:18
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,749 by rmoretti
Tue, 2021-02-09 13:45
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,793 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
601 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
9,951 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,802 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,458 by yuvals
Sat, 2014-06-21 02:17
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