You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
6,260 |
by rmoretti Mon, 2014-11-03 16:39 |
|
|
possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
2 |
2,616 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,817 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,631 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,389 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,553 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,327 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
2 |
647 |
by Liviu Copoiu Tue, 2022-11-08 10:43 |
|
|
Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
0 |
421 |
by Karthik Wed, 2022-07-13 23:45 |
|
|
pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
8,407 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
1,827 |
by matteoferla Mon, 2021-09-20 06:05 |
|
|
Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
1,958 |
by nawsad Wed, 2014-06-25 13:26 |
|
|
Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
1 |
2,015 |
by rmoretti Tue, 2014-11-04 10:35 |
|
|
pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
1,803 |
by ssrb Tue, 2016-07-12 10:02 |
|
|
PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,372 |
by diasmarieli Fri, 2021-11-26 05:11 |
|
|
Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
5,397 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
1,859 |
by rmoretti Wed, 2019-04-03 09:58 |
|
|
Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
2,708 |
by matteoferla Thu, 2018-10-04 01:30 |
|
|
Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
2,170 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,272 |
by smlewis Wed, 2019-12-04 13:07 |
|
|
Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,816 |
by rmoretti Thu, 2015-08-06 09:21 |
|
|
pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
4,032 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
1 |
589 |
by rmoretti Tue, 2022-09-06 08:13 |
|
|
PDB output sum by enoee » Fri, 2010-07-16 12:29 |
1 |
2,046 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
2 |
4,067 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
6 |
6,956 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
2,366 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
3,945 |
by ltrabuco Mon, 2014-04-21 06:47 |
|
|
patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,503 |
by matteoferla Tue, 2020-06-23 10:58 |
|
|
Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
1 |
1,976 |
by rmoretti Mon, 2016-11-14 15:12 |
|
|
partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
1 |
1,264 |
by rmoretti Fri, 2021-05-28 08:54 |
|
|
Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
1,428 |
by rmoretti Mon, 2018-10-08 11:20 |
|
|
params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
4 |
2,274 |
by everyday847 Thu, 2021-04-01 11:59 |
|
|
Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,333 |
by DmitriiN Wed, 2016-06-01 15:46 |
|
|
parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
1 |
981 |
by nannemdp Sun, 2021-06-06 09:26 |
|
|
Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
1 |
2,078 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
2,188 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
3 |
3,417 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
1 |
1,914 |
by nawsad Fri, 2014-06-20 03:00 |
|
|
Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
1 |
3,404 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,592 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
22 |
18,027 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
1 |
2,400 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
6,396 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
4,672 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
1 |
2,126 |
by rmoretti Mon, 2015-05-25 11:07 |
|
|
Output and Input Tutorial by jgustat » Fri, 2022-07-01 13:07 |
2 |
832 |
by jgustat Fri, 2022-07-01 13:26 |
|
|
Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
0 |
779 |
by pedro.guillem Thu, 2020-05-14 04:22 |
|
|
optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
1 |
2,058 |
by rmoretti Mon, 2017-05-15 09:03 |
|
|
optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
6,424 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
2,071 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
1 |
1,178 |
by rmoretti Tue, 2021-04-13 06:42 |
|
|
Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
3,391 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
0 |
387 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
|
|
Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
647 |
by Antonia Wed, 2021-06-16 12:30 |
|
|
obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
3 |
3,258 |
by scombs Mon, 2014-04-21 06:47 |
|
|
Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
0 |
645 |
by CameronJA Mon, 2021-06-14 16:12 |
|
|
Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
2 |
2,614 |
by JadAbbass Tue, 2014-02-18 07:27 |
|
|
null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
1 |
2,071 |
by fred Mon, 2014-04-21 06:47 |
|
|
nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
10,261 |
by dgront Mon, 2014-04-21 06:47 |
|
|
NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
6 |
4,925 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
|
|
Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
2 |
4,151 |
by Victor Fri, 2014-01-31 10:41 |
|
|
Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
2,135 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
1 |
1,949 |
by rmoretti Fri, 2016-04-08 08:43 |
|
|
NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
3 |
3,379 |
by mpiuzzi Mon, 2014-04-21 06:47 |
|
|
No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
4 |
782 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
|
|
no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,507 |
by rmoretti Mon, 2014-06-16 08:23 |
|
|
No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
6 |
5,892 |
by robren Mon, 2014-04-21 06:47 |
|
|
No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
3,146 |
by smlewis Thu, 2016-01-14 08:19 |
|
|
No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,796 |
by rmoretti Tue, 2016-07-12 08:40 |
|
|
NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
1 |
2,173 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
New parametrization problems by DmitriiN » Wed, 2016-06-08 05:09 |
25 |
19,359 |
by smlewis Tue, 2016-06-28 09:05 |
|
|
new installation on local computer problem by lqzhang » Mon, 2010-02-01 08:41 |
1 |
1,837 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,726 |
by rmoretti Thu, 2016-09-08 07:56 |
|
|
Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,484 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
2,936 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
0 |
2,015 |
by burkheadlab Mon, 2014-04-21 06:47 |
|
|
NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
3,798 |
by franfdez Mon, 2014-04-21 06:47 |
|
|
nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
1 |
2,279 |
by rmoretti Fri, 2015-07-03 13:04 |
|
|
Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
6 |
5,277 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
0 |
413 |
by SebastianBB Mon, 2022-11-21 08:33 |
|
|
Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,367 |
by smlewis Fri, 2019-06-28 13:56 |
|
|
mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,606 |
by jarek Mon, 2014-04-21 06:48 |
|
|
Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
1,032 |
by frankfurter1 Wed, 2018-05-09 04:40 |
|
|
Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,073 |
by smlewis Thu, 2016-04-21 16:00 |
|
|
Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
1 |
3,987 |
by rmoretti Tue, 2018-04-10 16:00 |
|
|
multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,771 |
by rmoretti Wed, 2016-06-29 10:20 |
|
|
Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
1 |
576 |
by rmoretti Tue, 2022-09-06 08:22 |
|
|
Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
1 |
2,994 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
4,277 |
by logandonaldson Mon, 2014-04-21 06:47 |
|
|
Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
3,048 |
by Sergey Menis Mon, 2014-04-21 06:48 |
|
|
Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
1,769 |
by rmoretti Wed, 2019-04-03 09:31 |
|
|
Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
1 |
933 |
by matteoferla Mon, 2021-12-13 02:27 |
|
|
Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
2 |
4,173 |
by rmoretti Tue, 2015-09-08 10:18 |
|
|
multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,749 |
by rmoretti Tue, 2021-02-09 13:45 |
|
|
MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
1,793 |
by yifeili1983 Mon, 2019-04-15 22:34 |
|
|
mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
0 |
601 |
by hanzhiz Thu, 2021-12-16 09:32 |
|
|
MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
9,951 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
1,802 |
by rlwoltz Wed, 2021-03-24 22:36 |
|
|
MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
1 |
5,458 |
by yuvals Sat, 2014-06-21 02:17 |
Log in to post new content in the forum.
