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Rosetta 3 - General
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,722 |
by smlewis Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,716 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
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3,713 |
by smlewis Mon, 2016-08-22 10:28 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
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3,709 |
by alejandro Mon, 2014-04-21 06:47 |
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Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
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3,704 |
by Matthys Mon, 2014-04-21 06:47 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
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3,693 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
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3,686 |
by IAndre Mon, 2014-04-21 06:47 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
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3,686 |
by biofisikx Mon, 2014-04-21 06:47 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
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3,674 |
by einew Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,659 |
by matteoferla Wed, 2019-11-20 02:32 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
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3,651 |
by smlewis Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,650 |
by smlewis Mon, 2014-04-21 06:47 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
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3,644 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
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3,637 |
by ssrb Tue, 2018-03-06 14:15 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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3,630 |
by jklett Mon, 2014-04-21 06:47 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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3,626 |
by szypanther Mon, 2014-05-26 22:03 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
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3,623 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,622 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta numbering with missing occupancies by ShaneOConnor » Fri, 2011-10-07 16:18 |
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3,601 |
by ShaneOConnor Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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3,600 |
by doranhen Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
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3,592 |
by smlewis Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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3,591 |
by rmoretti Wed, 2018-11-21 14:11 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
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3,589 |
by kwu030 Thu, 2023-05-18 08:31 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
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3,587 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
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3,586 |
by smlewis Mon, 2014-04-21 06:47 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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3,585 |
by smlewis Mon, 2014-04-21 06:47 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
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3,580 |
by rmoretti Thu, 2015-09-17 12:42 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,579 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
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3,578 |
by rmoretti Mon, 2014-04-21 06:47 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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3,576 |
by rmoretti Mon, 2014-04-21 06:48 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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3,574 |
by phanvy Wed, 2014-07-02 23:32 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,571 |
by smlewis Mon, 2014-04-21 06:47 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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3,563 |
by rmoretti Mon, 2014-09-29 13:45 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
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3,560 |
by rmoretti Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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3,559 |
by rmoretti Sun, 2015-07-05 14:28 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,557 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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3,545 |
by smlewis Fri, 2016-07-22 07:31 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
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3,544 |
by inder Mon, 2014-04-21 06:47 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
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3,542 |
by rmoretti Mon, 2014-04-21 06:47 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
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3,536 |
by smlewis Mon, 2014-04-21 06:47 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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3,533 |
by fred Fri, 2014-04-04 11:34 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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3,522 |
by rmoretti Thu, 2018-06-28 14:09 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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3,517 |
by rmoretti Wed, 2014-12-03 18:52 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
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3,516 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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3,513 |
by ctaylor Mon, 2014-04-21 06:47 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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3,513 |
by rmoretti Tue, 2014-06-03 11:45 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,511 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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3,509 |
by rmoretti Fri, 2018-08-03 11:39 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
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3,508 |
by ytao Mon, 2014-04-21 06:48 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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3,504 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
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3,501 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
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3,499 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
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3,497 |
by vanita Mon, 2014-04-21 06:47 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
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3,494 |
by ac.research Sun, 2017-09-24 11:25 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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3,486 |
by ela Thu, 2018-08-09 08:04 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
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3,471 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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3,468 |
by scombs Mon, 2014-04-21 06:47 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
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3,466 |
by rmoretti Mon, 2015-05-25 11:00 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
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3,466 |
by aaxx Wed, 2019-11-06 01:44 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
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3,462 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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3,454 |
by ctaylor Mon, 2014-04-21 06:47 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
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3,454 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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3,454 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
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3,453 |
by jrcf Fri, 2016-02-12 16:41 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
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3,443 |
by smlewis Sun, 2017-11-19 20:08 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
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3,435 |
by jos Mon, 2014-04-21 06:47 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
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3,433 |
by matteoferla Mon, 2018-02-26 02:05 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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3,425 |
by smlewis Fri, 2016-07-29 07:43 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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3,425 |
by rmoretti Mon, 2016-03-07 14:20 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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3,423 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
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3,421 |
by ac.research Sat, 2019-08-03 08:12 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
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3,416 |
by smlewis Mon, 2018-12-31 08:58 |
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RosettaDesign Server, reproducing optimized interface conformation by AlexanderMetz » Thu, 2012-02-09 10:41 |
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3,403 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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3,389 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
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3,384 |
by jadolfbr Mon, 2014-04-21 06:48 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
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3,380 |
by smlewis Mon, 2014-04-21 06:47 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
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3,367 |
by renedominik Sat, 2018-07-07 03:03 |
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about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
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3,366 |
by smlewis Mon, 2014-04-21 06:47 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
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3,363 |
by vsjasion Mon, 2014-04-21 06:47 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
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3,363 |
by smlewis Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
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3,362 |
by smlewis Thu, 2016-01-14 08:19 |
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relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
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3,360 |
by smlewis Mon, 2014-04-21 06:47 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
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3,360 |
by rmoretti Thu, 2015-12-03 15:14 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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3,355 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
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3,354 |
by smlewis Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,350 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
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3,344 |
by nannemdp Fri, 2021-02-05 06:49 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,342 |
by rmoretti Mon, 2014-04-21 06:47 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
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3,338 |
by franfdez Mon, 2014-04-21 06:47 |
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question about scoring silent output files and their contents by burkheadlab » Wed, 2011-07-27 16:28 |
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3,334 |
by rmoretti Mon, 2014-04-21 06:47 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
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3,331 |
by rmoretti Wed, 2019-04-03 09:31 |
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Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
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3,322 |
by justin Mon, 2014-04-21 06:47 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
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3,315 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
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3,310 |
by jklett Mon, 2014-04-21 06:47 |
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RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
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3,303 |
by ndousis Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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3,287 |
by msun Mon, 2014-04-21 06:47 |
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Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
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3,282 |
by jrcf Tue, 2016-05-03 17:40 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
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3,279 |
by phanvy Wed, 2014-12-10 00:17 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
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3,278 |
by gw Mon, 2014-04-21 06:47 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
3,274 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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