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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
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2,870 |
by jos Mon, 2014-04-21 06:47 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
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2,868 |
by rmoretti Thu, 2014-04-10 07:38 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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2,859 |
by jadolfbr Tue, 2019-04-16 09:15 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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2,856 |
by rmoretti Wed, 2014-12-03 18:52 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
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2,853 |
by smlewis Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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2,846 |
by rmoretti Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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2,841 |
by doranhen Mon, 2014-04-21 06:47 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
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2,837 |
by smlewis Mon, 2014-04-21 06:47 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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2,831 |
by smlewis Fri, 2016-07-22 07:31 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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2,821 |
by smlewis Mon, 2014-04-21 06:47 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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2,821 |
by rmoretti Thu, 2018-03-08 07:46 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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2,811 |
by linucks Fri, 2018-02-23 08:08 |
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ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
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2,808 |
by phanvy Mon, 2014-04-21 03:58 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
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2,804 |
by smlewis Mon, 2016-08-22 10:28 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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2,802 |
by smlewis Mon, 2014-04-21 06:47 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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2,802 |
by smlewis Mon, 2014-04-21 06:47 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
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2,799 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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2,796 |
by rmoretti Tue, 2014-06-03 11:45 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
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2,795 |
by rmoretti Thu, 2015-09-17 12:42 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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2,785 |
by rmoretti Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
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2,784 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
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2,783 |
by rmoretti Wed, 2017-06-28 01:33 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
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2,782 |
by franfdez Mon, 2014-04-21 06:47 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
2,781 |
by Jacky010 Tue, 2019-05-14 01:24 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
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2,779 |
by ytao Mon, 2014-04-21 06:48 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
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2,778 |
by smlewis Mon, 2014-04-21 06:47 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
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2,759 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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2,752 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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2,751 |
by rmoretti Mon, 2014-04-21 06:48 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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2,748 |
by rmoretti Sun, 2015-07-05 14:28 |
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about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
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2,745 |
by smlewis Mon, 2014-04-21 06:47 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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2,742 |
by smlewis Tue, 2017-04-18 08:33 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
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2,736 |
by helenah Tue, 2020-11-03 04:33 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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2,732 |
by cossio Wed, 2014-12-03 14:51 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
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2,728 |
by vanita Mon, 2014-04-21 06:47 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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2,727 |
by phanvy Wed, 2014-07-02 23:32 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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2,726 |
by scombs Mon, 2014-04-21 06:47 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
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2,722 |
by linucks Mon, 2017-07-03 09:50 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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2,721 |
by smlewis Mon, 2014-04-21 06:47 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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2,715 |
by rmoretti Mon, 2014-04-21 06:48 |
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question about scoring silent output files and their contents by burkheadlab » Wed, 2011-07-27 16:28 |
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2,709 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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2,708 |
by smlewis Mon, 2014-04-21 06:47 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
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2,698 |
by jrcf Fri, 2016-02-12 16:41 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
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2,695 |
by zhisheng Mon, 2014-04-21 06:47 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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2,683 |
by ctaylor Mon, 2014-04-21 06:47 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
2,683 |
by rmoretti Mon, 2014-09-29 13:45 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
2 |
2,681 |
by Awagner7 Tue, 2020-04-28 10:51 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
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2,680 |
by vsjasion Mon, 2014-04-21 06:47 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
2,676 |
by smlewis Mon, 2014-04-21 06:47 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
5 |
2,675 |
by smlewis Tue, 2018-06-12 10:54 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
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2,672 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
3 |
2,672 |
by jklett Mon, 2014-04-21 06:47 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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2,670 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
2,668 |
by smlewis Wed, 2018-04-11 11:45 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
2,668 |
by scombs Mon, 2014-04-21 06:47 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
2 |
2,667 |
by gw Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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2,666 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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2,664 |
by smlewis Mon, 2014-04-21 06:47 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
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2,656 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
2,650 |
by rmoretti Mon, 2018-01-15 15:24 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
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2,650 |
by rmoretti Thu, 2015-12-03 15:14 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
2,648 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
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2,637 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
2,637 |
by everyday847 Tue, 2017-11-28 13:07 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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2,635 |
by ctaylor Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
3 |
2,630 |
by smlewis Mon, 2014-04-21 06:47 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
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2,625 |
by jadolfbr Mon, 2014-04-21 06:47 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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2,623 |
by fred Fri, 2014-04-04 11:34 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
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2,622 |
by doranhen Mon, 2014-04-21 06:47 |
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relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
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2,616 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
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2,600 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
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2,596 |
by jklett Mon, 2014-04-21 06:47 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
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2,596 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
2,590 |
by rmoretti Mon, 2014-04-21 06:48 |
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Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
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2,590 |
by justin Mon, 2014-04-21 06:47 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
2,583 |
by rmoretti Sat, 2017-12-16 12:19 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,583 |
by einew Mon, 2014-04-21 06:47 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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2,579 |
by smlewis Mon, 2014-04-21 06:47 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
2,573 |
by rmoretti Mon, 2015-05-25 11:00 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
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2,573 |
by smlewis Mon, 2014-04-21 06:47 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
2,571 |
by jadolfbr Mon, 2014-04-21 06:48 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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2,566 |
by wangyr Mon, 2014-04-21 06:47 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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2,564 |
by Trentage Mon, 2014-04-21 06:47 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
2,556 |
by smlewis Fri, 2016-07-29 07:43 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,545 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
2,541 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
2 |
2,535 |
by pledor Mon, 2014-04-21 06:47 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
1 |
2,534 |
by rmoretti Fri, 2015-07-03 13:24 |
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RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
2 |
2,525 |
by ndousis Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
2,520 |
by alejandro Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
2,518 |
by smlewis Thu, 2016-01-14 08:19 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
2,517 |
by Anonymous Mon, 2014-04-21 06:47 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,513 |
by jadolfbr Mon, 2014-04-21 06:48 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,513 |
by rmoretti Mon, 2014-04-21 06:48 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
1 |
2,512 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
1 |
2,508 |
by IAndre Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
1 |
2,508 |
by smlewis Tue, 2014-12-23 13:58 |
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Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
1 |
2,507 |
by reddybg Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
2,503 |
by smlewis Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
2,497 |
by Lindsay Mon, 2014-04-21 06:47 |
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