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Rosetta 3 - General
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
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2,321 |
by rmoretti Mon, 2014-04-21 06:48 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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1,882 |
by rmoretti Mon, 2017-03-06 08:37 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
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1,498 |
by rmoretti Fri, 2021-05-28 08:54 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,484 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
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2,026 |
by smlewis Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
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2,435 |
by Anonymous Mon, 2014-04-21 06:47 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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3,120 |
by rmoretti Mon, 2014-04-21 06:48 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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2,598 |
by rmoretti Wed, 2014-07-16 08:07 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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1,829 |
by matteoferla Thu, 2018-09-13 06:21 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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2,221 |
by paulbo Sun, 2024-02-04 22:03 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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2,453 |
by smlewis Mon, 2014-04-21 06:47 |
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replace a short helix by berk » Wed, 2013-06-05 10:19 |
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2,052 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
1 |
2,063 |
by rmoretti Thu, 2015-04-30 07:13 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
1 |
1,937 |
by rmoretti Wed, 2016-06-15 16:06 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
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3,770 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
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3,511 |
by ytao Mon, 2014-04-21 06:48 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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3,513 |
by rmoretti Tue, 2014-06-03 11:45 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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3,885 |
by attesor Thu, 2015-10-22 03:42 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
3,081 |
by felipet Sat, 2016-07-09 09:50 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
2 |
2,703 |
by smlewis Mon, 2014-04-21 06:47 |
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Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
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4,406 |
by Victor Fri, 2014-01-31 10:41 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
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2,628 |
by SergeyP Thu, 2016-05-05 02:07 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
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3,036 |
by mintseris Mon, 2014-04-21 06:47 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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2,855 |
by barak Mon, 2014-04-21 06:47 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
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2,036 |
by matteoferla Thu, 2021-10-07 09:31 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
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3,073 |
by Lindsay Mon, 2014-04-21 06:47 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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2,420 |
by eminegenetics Wed, 2018-07-18 13:48 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
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3,652 |
by rmoretti Mon, 2014-04-21 06:47 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,749 |
by exchhattu Mon, 2014-04-21 06:47 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
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2,751 |
by rmoretti Mon, 2014-04-21 06:47 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
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2,820 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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2,782 |
by rmoretti Fri, 2015-01-09 10:59 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
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2,482 |
by sgaray Fri, 2021-06-25 11:26 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
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2,909 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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2,511 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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1,138 |
by asbelx Mon, 2022-06-06 23:15 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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681 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
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3,053 |
by samuelrpita Thu, 2015-08-06 14:23 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,837 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
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772 |
by Brian Wiley Tue, 2023-01-31 19:08 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
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3,422 |
by ac.research Sat, 2019-08-03 08:12 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,854 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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clustering PDBs from docking by jbujons » Wed, 2024-04-24 08:34 |
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39 |
by jbujons Wed, 2024-04-24 09:34 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
2 |
4,663 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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3,604 |
by doranhen Mon, 2014-04-21 06:47 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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2,123 |
by rmoretti Fri, 2019-03-29 14:43 |
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different relaxed energy scores for one same protein structure by ivareve125 » Sun, 2023-07-16 17:54 |
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572 |
by ivareve125 Mon, 2023-07-17 17:37 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
2 |
2,596 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,864 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,893 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
2 |
2,451 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
1,763 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
2 |
715 |
by Wexter300 Mon, 2023-02-13 13:04 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,511 |
by DmitriiN Wed, 2016-06-01 15:46 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
2 |
3,717 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
2 |
2,947 |
by smiruthi Mon, 2014-04-21 06:47 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,414 |
by lah435 Mon, 2017-04-03 19:50 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
2,010 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,927 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
2,292 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
2 |
1,484 |
by almeida85 Mon, 2021-02-08 09:50 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,334 |
by ac.research Fri, 2017-08-18 00:53 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
3,149 |
by frits Mon, 2014-04-21 06:48 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
2,731 |
by MarkW Fri, 2015-07-03 15:36 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
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3,728 |
by smlewis Mon, 2014-04-21 06:47 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
4,133 |
by ltrabuco Mon, 2014-04-21 06:47 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,778 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,772 |
by mxp Wed, 2020-07-08 23:25 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
2,706 |
by gipsonb Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,986 |
by DanielK Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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7,084 |
by lanselibai Mon, 2014-09-22 08:13 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
2 |
2,291 |
by aneamtu Mon, 2018-01-08 23:49 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
2 |
1,270 |
by e3lm Fri, 2022-05-06 16:10 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
2 |
3,590 |
by smlewis Mon, 2014-04-21 06:47 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
2 |
1,839 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,643 |
by diasmarieli Fri, 2021-11-26 05:11 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
2 |
2,203 |
by nleroy Fri, 2019-11-08 12:44 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
2,677 |
by biofisikx Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
3,071 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
2 |
2,129 |
by orionshih Tue, 2018-05-01 21:16 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
1,644 |
by matteoferla Mon, 2021-07-12 02:23 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,540 |
by smlewis Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
2 |
3,154 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
2 |
3,090 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,926 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,875 |
by jadolfbr Sun, 2016-12-11 10:53 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
2,339 |
by duz Thu, 2021-04-01 09:34 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
2 |
3,206 |
by Trentage Mon, 2014-04-21 06:47 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
3,120 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
2,076 |
by rmoretti Mon, 2018-08-20 11:51 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,569 |
by smlewis Wed, 2019-12-04 13:07 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,562 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,954 |
by rmoretti Tue, 2021-02-09 13:45 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
2 |
882 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,921 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,743 |
by smlewis Sun, 2017-01-15 18:10 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
2,600 |
by smlewis Mon, 2014-04-21 06:47 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,768 |
by ytao Mon, 2014-04-21 06:47 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
2 |
439 |
by Yair Tenorio Mon, 2023-10-23 12:29 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
2,368 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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