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Rosetta 3 - General
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,080 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
1,822 |
by DmitriiN Wed, 2016-06-01 15:46 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
2 |
1,709 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
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3,117 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
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2,145 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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1,676 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
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863 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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3,241 |
by jcsaborio Mon, 2014-04-21 06:47 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
1,614 |
by ac.research Fri, 2017-08-18 00:53 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
2,358 |
by lvtun Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
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2,400 |
by smiruthi Mon, 2014-04-21 06:47 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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1,704 |
by lah435 Mon, 2017-04-03 19:50 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
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1,276 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
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2,447 |
by mintseris Mon, 2014-04-21 06:47 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,333 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
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1,583 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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746 |
by almeida85 Mon, 2021-02-08 09:50 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
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2,329 |
by exchhattu Mon, 2014-04-21 06:47 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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984 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
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608 |
by diasmarieli Fri, 2021-11-26 05:11 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
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2,385 |
by frits Mon, 2014-04-21 06:48 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
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2,071 |
by MarkW Fri, 2015-07-03 15:36 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
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2,169 |
by frichter Mon, 2014-04-21 06:47 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
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2,089 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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1,022 |
by mxp Wed, 2020-07-08 23:25 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
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2,131 |
by gipsonb Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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2,363 |
by DanielK Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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5,738 |
by lanselibai Mon, 2014-09-22 08:13 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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1,605 |
by aneamtu Mon, 2018-01-08 23:49 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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158 |
by e3lm Fri, 2022-05-06 16:10 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,584 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,360 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
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2,206 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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2,153 |
by jadolfbr Sun, 2016-12-11 10:53 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
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1,006 |
by duz Thu, 2021-04-01 09:34 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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2,668 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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1,328 |
by nleroy Fri, 2019-11-08 12:44 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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2,397 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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1,421 |
by orionshih Tue, 2018-05-01 21:16 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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624 |
by matteoferla Mon, 2021-07-12 02:23 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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1,128 |
by rmoretti Tue, 2021-02-09 13:45 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
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2,240 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
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2,031 |
by smlewis Sun, 2017-01-15 18:10 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
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2,132 |
by exchhattu Mon, 2014-04-21 06:47 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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2,414 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
1,362 |
by rmoretti Mon, 2018-08-20 11:51 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
1,448 |
by smlewis Wed, 2019-12-04 13:07 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
1,879 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,146 |
by banshee Mon, 2014-04-21 06:48 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,008 |
by mmarlett Thu, 2016-06-16 07:06 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
1,557 |
by matteoferla Thu, 2019-08-22 05:39 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,115 |
by ytao Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,107 |
by smlewis Mon, 2014-04-21 06:47 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
1,587 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
1,312 |
by matteoferla Wed, 2020-01-29 12:18 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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719 |
by amystevens Thu, 2021-09-30 14:18 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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219 |
by rjacak Thu, 2022-03-31 10:53 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
2,900 |
by szypanther Mon, 2014-05-26 22:03 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
2 |
1,561 |
by CameronJA Wed, 2022-01-19 20:50 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
2 |
2,567 |
by wangyr Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
2,498 |
by Lindsay Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
2,368 |
by Run Mon, 2014-04-21 06:48 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,077 |
by varma Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
2,000 |
by SergeyP Sat, 2015-12-19 05:20 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
1,944 |
by msardejani Wed, 2016-10-05 10:53 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
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2,192 |
by doranhen Mon, 2014-04-21 06:47 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
2,318 |
by pachecoj Thu, 2014-10-09 18:15 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
1,396 |
by rmoretti Mon, 2018-01-15 14:35 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
1,374 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
1,238 |
by dfcoelho Tue, 2019-11-19 10:16 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,284 |
by Lindsay Mon, 2014-04-21 06:47 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
2,052 |
by biofisikx Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
4,527 |
by pepfolder Mon, 2014-04-21 06:47 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
1,279 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,220 |
by louisclark Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
2,623 |
by doranhen Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
3,722 |
by Lindsay Mon, 2014-04-21 06:48 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
3,740 |
by phanvy Thu, 2014-10-16 18:54 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
2 |
1,464 |
by sheehajh Thu, 2018-02-08 21:18 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
1,267 |
by rmoretti Wed, 2019-04-03 09:58 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
2 |
822 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
2 |
61 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
2 |
2,565 |
by Trentage Mon, 2014-04-21 06:47 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,243 |
by ctaylor Mon, 2014-04-21 06:47 |
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RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
2 |
2,527 |
by ndousis Mon, 2014-04-21 06:47 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
2,981 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
4,085 |
by rmoretti Mon, 2014-04-21 06:47 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
2 |
3,248 |
by Apiwat Thu, 2014-04-17 09:56 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
2 |
2,383 |
by rmoretti Thu, 2018-06-28 14:09 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,113 |
by bjharris Wed, 2020-09-09 20:04 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
2 |
583 |
by patcD Wed, 2021-09-01 06:54 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
1,969 |
by smlewis Mon, 2014-04-21 06:47 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
2 |
2,204 |
by pachecoj Tue, 2014-11-11 19:30 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
1,239 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
2,439 |
by dave Mon, 2014-04-21 06:47 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
2 |
1,502 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,229 |
by berk Mon, 2014-04-21 06:48 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
2 |
2,380 |
by pitmand Tue, 2015-05-26 12:20 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
4,841 |
by jwillis Sat, 2015-06-27 21:11 |
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