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Rosetta 3 - General
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
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3,613 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
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1,834 |
by mao_x Thu, 2019-08-08 01:37 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
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1,237 |
by rohi Tue, 2020-10-13 09:15 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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2,779 |
by Trentage Mon, 2014-04-21 06:47 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
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2,874 |
by zhisheng Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
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2,479 |
by aaj Mon, 2016-02-29 04:45 |
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Renumbering PDB by jgustat » Wed, 2022-07-27 13:37 |
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381 |
by jgustat Thu, 2022-07-28 10:00 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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606 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
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1,064 |
by matteoferla Thu, 2021-10-07 09:31 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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2,169 |
by smlewis Mon, 2014-04-21 06:47 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
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2,665 |
by Lindsay Mon, 2014-04-21 06:47 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
2,996 |
by ytao Mon, 2014-04-21 06:48 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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3,032 |
by rmoretti Tue, 2014-06-03 11:45 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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3,298 |
by attesor Thu, 2015-10-22 03:42 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
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2,546 |
by felipet Sat, 2016-07-09 09:50 |
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Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
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3,673 |
by ctaylor Mon, 2014-04-21 06:47 |
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Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
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3,704 |
by Victor Fri, 2014-01-31 10:41 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
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2,170 |
by SergeyP Thu, 2016-05-05 02:07 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
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2,327 |
by smlewis Mon, 2014-04-21 06:47 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
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2,483 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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1,978 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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513 |
by asbelx Mon, 2022-06-06 23:15 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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1,924 |
by eminegenetics Wed, 2018-07-18 13:48 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
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3,179 |
by rmoretti Mon, 2014-04-21 06:47 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
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3,217 |
by biofisikx Mon, 2014-04-21 06:47 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
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2,325 |
by rmoretti Mon, 2014-04-21 06:47 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
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2,312 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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2,329 |
by rmoretti Fri, 2015-01-09 10:59 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
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1,332 |
by sgaray Fri, 2021-06-25 11:26 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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3,517 |
by jcsaborio Mon, 2014-04-21 06:47 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
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2,180 |
by exchhattu Mon, 2014-04-21 06:47 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
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4,167 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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3,117 |
by doranhen Mon, 2014-04-21 06:47 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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1,607 |
by rmoretti Fri, 2019-03-29 14:43 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
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2,580 |
by samuelrpita Thu, 2015-08-06 14:23 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,262 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
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57 |
by Brian Wiley Tue, 2023-01-31 19:08 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
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2,562 |
by exchhattu Mon, 2014-04-21 06:47 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
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2,214 |
by ndousis Mon, 2014-04-21 06:47 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
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2,532 |
by ac.research Sat, 2019-08-03 08:12 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,320 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
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2,035 |
by DmitriiN Wed, 2016-06-01 15:46 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
2 |
2,424 |
by frichter Mon, 2014-04-21 06:47 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
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1,978 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
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3,369 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
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2,364 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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1,898 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
1,175 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
2 |
2,679 |
by aminzia Fri, 2019-07-26 13:14 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
1,873 |
by ac.research Fri, 2017-08-18 00:53 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
2 |
2,573 |
by smiruthi Mon, 2014-04-21 06:47 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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1,929 |
by lah435 Mon, 2017-04-03 19:50 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
1,489 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,512 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
1,806 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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981 |
by almeida85 Mon, 2021-02-08 09:50 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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1,240 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
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971 |
by diasmarieli Fri, 2021-11-26 05:11 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
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2,370 |
by exchhattu Mon, 2014-04-21 06:47 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
2,616 |
by frits Mon, 2014-04-21 06:48 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
2,294 |
by MarkW Fri, 2015-07-03 15:36 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
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2,300 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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1,257 |
by mxp Wed, 2020-07-08 23:25 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
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2,171 |
by dnasmith Mon, 2014-04-21 06:47 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
2,323 |
by gipsonb Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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2,547 |
by DanielK Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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6,169 |
by lanselibai Mon, 2014-09-22 08:13 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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1,825 |
by aneamtu Mon, 2018-01-08 23:49 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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528 |
by e3lm Fri, 2022-05-06 16:10 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,747 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,588 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,435 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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2,387 |
by jadolfbr Sun, 2016-12-11 10:53 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
1,368 |
by duz Thu, 2021-04-01 09:34 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
2 |
1,593 |
by nleroy Fri, 2019-11-08 12:44 |
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Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,212 |
by Matthys Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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2,614 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
2 |
1,647 |
by orionshih Tue, 2018-05-01 21:16 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
964 |
by matteoferla Mon, 2021-07-12 02:23 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
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2,472 |
by jtmacd Mon, 2014-04-21 06:47 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,462 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,253 |
by smlewis Sun, 2017-01-15 18:10 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
2,630 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
1,564 |
by rmoretti Mon, 2018-08-20 11:51 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
1,778 |
by smlewis Wed, 2019-12-04 13:07 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
2 |
2,755 |
by pledor Mon, 2014-04-21 06:47 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,432 |
by mansi Mon, 2014-04-21 06:47 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,096 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,381 |
by rmoretti Tue, 2021-02-09 13:45 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
2 |
201 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
2 |
4,116 |
by knutjbj Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,357 |
by banshee Mon, 2014-04-21 06:48 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,228 |
by mmarlett Thu, 2016-06-16 07:06 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
1,846 |
by matteoferla Thu, 2019-08-22 05:39 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,324 |
by ytao Mon, 2014-04-21 06:47 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
1,853 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
1,663 |
by matteoferla Wed, 2020-01-29 12:18 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
2 |
1,057 |
by amystevens Thu, 2021-09-30 14:18 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
2 |
565 |
by rjacak Thu, 2022-03-31 10:53 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
3,120 |
by szypanther Mon, 2014-05-26 22:03 |
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